Glyma08g36790 - SoyBase

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Report for Sequence Feature Glyma08g36790

Feature Type:	gene_model
Chromosome:	Gm08
Start:	35111160
stop:	35117175
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g36790

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G22720	AT	Annotation by Michelle Graham. TAIR10: SPT2 chromatin protein \| chr2:9658182-9660532 FORWARD LENGTH=569	SoyBase	E_val: 8.00E-39	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR22691	Panther	YEAST SPT2-RELATED	JGI		ISS
PTHR22691:SF8	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF08243	PFAM	SPT2 chromatin protein	JGI		ISS
UniRef100_I1KX34	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KX34_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2R6R5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=3 Tax=Oryza sativa Japonica Group RepID=Q2R6R5_ORYSJ	SoyBase	E_val: 1.00E-36	ISS

Expression Patterns of Glyma08g36790

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g36790

Paralog	Evidence	Comments
Glyma01g23726	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g36790 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g272800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g36790

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g36790

Limit To All Plant Sequences

>Glyma08g36790.1   sequence type=CDS   gene model=Glyma08g36790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGGGGCTATGGCGATGAAGGAGATGGTTACGATGATTATTATGAGGATGAAGATGAGTATGAAGAGGAGGCTGAGGAAGAGTATGAAGAAGAGGAAGAGGCGCCTAGGAAGCCTTCAAAAGAAGAAATGGAGTACCTTGAGTTGAGGCAGAAGTTGAAAGAATCCATTAGAAAGCAGATGAAGAAGGAGAGTAGTGGTAGTGGTACTTCGCGCCGGGATTCAACCGATCGAAGCAAGAATAAGCTTCCTTATGATAATTATGGTTCCTTTTTTGGTCCATCTCAACCAGTTATTGCACAGAGAGTAATTCAGGAGAGCAAGTCATTGCTAGAAAATCAGCATTTGGCATCTAGGTTTTCTGACCCACATCGCATTAAGAAGAACCAGAATAAAGTACCTAGTGGAGGATCAAAGTCTTCATCTCATAATCTGGCACCCAAAGTCAGCGAGATGAAAGTTAAAGCCCAGAAAATCAAGAATACTAGAGATTACTCATTTCTTTTATCTGATGATGCGGAACTTCCAGCTCCTTCTAAAGCCCCCCCATCTCAGAATATGCCTATACGAAATTCTGAGGGACGACCAGCTCAAGTTCCAGCAAGGAATAAACTGCCTTTGAGCAATGGTGGCAAGCATGTTCGTGCCAGTCATGAGGAACGGAATGTAGGTTCTGCAGCTGGCCATTTGCCTCCTAAATCAGGATCCAGTTACAGGACCAGTTCAACCAGTAAACCTAGTATGGCATCAGCAGATTCTAGGAAACAGCCTGGTAACAACAGTGGTAATGGACCAGGCCGGCCTGTTGGGCCAAAAGGCTTGCCTTCAAAGATTTCTGTTGGTACCACTGGGAATAAGTCTTCAACACCTGCTATAAAAAACCCAGTGAATGGTATGCAGAAATCACTCCCTTCGAAGAATCATCCATCCATTCCAAAACAGATTGTAGAACAAAGAATTTCGAAGCACAGTGTTGAACAAAGAATTCCAAAGCAGAGTGTTGAACAAAGATTTCCAAAGCAGAGTGTTGAACAAAGAATTCAAAAGCAGAGTGTTGAACAAAGAATTCAAAAGCAGAGTGTGGAACAAAGAAAAGACATACGAGAACTATATAGACCTAAAATGGCACCAAAACAACCAGTGGCATCATCAAAACCACAGATAAATAGGCCACTTAAACAAAATTCAGTGCATACTGCTTCGCAAGATCGTCGTCCCAAGCCTAAGGCTGCTAAACGACCCTTTGATGATGAGGAGGACGAAGTGGATGTCAGGAACATGATCAGAAATATGTTTAATTACAACCCTAATAAATTTGTTGATGATGATGACGTCGACGATATGGAGGCAGGCTTTGATGAAATCTTGAGGGAAGAAAAGAGGAGTGAAATGATTGCTAAAAAGGAGGACGAGGAGCAACTTAGGTTAATCGAGGAGGAAGAGGAAAGAGAGAGGAGAAGAAAAATGGCAAAGTTAAAGAAACGGAAGCTTGGTTATTAG

Predicted protein sequences of Glyma08g36790

Limit To All Plant Sequences

>Glyma08g36790.1   sequence type=predicted peptide   gene model=Glyma08g36790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRGYGDEGDGYDDYYEDEDEYEEEAEEEYEEEEEAPRKPSKEEMEYLELRQKLKESIRKQMKKESSGSGTSRRDSTDRSKNKLPYDNYGSFFGPSQPVIAQRVIQESKSLLENQHLASRFSDPHRIKKNQNKVPSGGSKSSSHNLAPKVSEMKVKAQKIKNTRDYSFLLSDDAELPAPSKAPPSQNMPIRNSEGRPAQVPARNKLPLSNGGKHVRASHEERNVGSAAGHLPPKSGSSYRTSSTSKPSMASADSRKQPGNNSGNGPGRPVGPKGLPSKISVGTTGNKSSTPAIKNPVNGMQKSLPSKNHPSIPKQIVEQRISKHSVEQRIPKQSVEQRFPKQSVEQRIQKQSVEQRIQKQSVEQRKDIRELYRPKMAPKQPVASSKPQINRPLKQNSVHTASQDRRPKPKAAKRPFDDEEDEVDVRNMIRNMFNYNPNKFVDDDDVDDMEAGFDEILREEKRSEMIAKKEDEEQLRLIEEEEERERRRKMAKLKKRKLGY*

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