Report for Sequence Feature Glyma08g36590
Feature Type: gene_model
Chromosome: Gm08
Start: 34677812
stop: 34680708
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g36590
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G72210 AT
Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:27180066-27182268 FORWARD LENGTH=320
SoyBase E_val: 5.00E-66 ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
PTHR11534 Panther
MYOGENIC FACTOR
JGI ISS
PTHR11534:SF7 Panther
MYOGENIC FACTOR MYF-5
JGI ISS
PF00010 PFAM
Helix-loop-helix DNA-binding domain
JGI ISS
UniRef100_G7LH18 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor bHLH96 n=1 Tax=Medicago truncatula RepID=G7LH18_MEDTR
SoyBase E_val: 3.00E-145 ISS
UniRef100_I1KX21 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KX21_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g36590
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma08g36590 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g271000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g36590
Coding sequences of Glyma08g36590
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g36590.1 sequence type=CDS gene model=Glyma08g36590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGACTTTGGAAACTCTTCAATCCAATGAGTTCTCCAACTTCATTATCTATGACACTATCTCTGCAACTCCATTTAGCAGCCATGGCTCCCCAGAGGCTAGTTTCTTGGAAAGTTTTGTGAACTATCAGGAGCAGCATGACCACCCTACATTTGATAATTGCGCAATGAGGACCCGAAAGCGTGAAGCCAGCGAACCAGAAAGCATTGGCCGGAGGCAGAATTCGGTGGCAGTGCAAGGGAGGAAGAAGAGGAGAAGGAAGCCAAGGGTTTGCAAAAACACGGAAGAGGCTGAGACACAAAGGATCACACACATTACAGTGGAAAGAAACCGCCGGAAGCAGATGAATGAGCATCTTGCTGTCCTTCGTTCACTCATGCCGGAGTCCTACGTCCAAAGGGGTGACCAGGCCTCTATAGTGGGTGGTGCCATAGAGTTTGTAAAAGAGCTGGAGCACCTCTTGCAATCACTTGAAGCTAGAAAGCTGCAACTTTTGCACCAAGAAGTGGCACAAACCAATGAAAATACGGCCATTTCCAAACTCATGCAACCTCCTTTTGCACATTGTTTTTCGTATCCACAGTACACATGGTCCCAGACTCCTAACAAATACACATCCAAGACCAAAGCTGCCATAGCTGATATCGAGGTTACTTTAATCGAGACCCATGCAAATCTTCGAATTCTCACCAGGAGAAGCAGCCACGGGCAGCTAACAAAGTTAGTAGCTGGTTTTCAAACGCTGTGCCTCACCGTCCTACATCTTAATGTCACCACCATAGACCCTTTGGTGTTCTATTCCTTCAGTGCTAAGGTTGAAGAAGGATTCCAACTTGGTTCAGTAGATGGTATTGCAACGGCAGTCCATCATTTGCTTGCAAGAATTGAAGAAGAGGCTTCCCTTTGCTGTTGA
Predicted protein sequences of Glyma08g36590
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g36590.1 sequence type=predicted peptide gene model=Glyma08g36590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MTLETLQSNEFSNFIIYDTISATPFSSHGSPEASFLESFVNYQEQHDHPTFDNCAMRTRKREASEPESIGRRQNSVAVQGRKKRRRKPRVCKNTEEAETQRITHITVERNRRKQMNEHLAVLRSLMPESYVQRGDQASIVGGAIEFVKELEHLLQSLEARKLQLLHQEVAQTNENTAISKLMQPPFAHCFSYPQYTWSQTPNKYTSKTKAAIADIEVTLIETHANLRILTRRSSHGQLTKLVAGFQTLCLTVLHLNVTTIDPLVFYSFSAKVEEGFQLGSVDGIATAVHHLLARIEEEASLCC*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
