SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G72210 | AT | Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:27180066-27182268 FORWARD LENGTH=320 | SoyBase | E_val: 5.00E-66 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| PTHR11534 | Panther | MYOGENIC FACTOR | JGI | ISS | |
| PTHR11534:SF7 | Panther | MYOGENIC FACTOR MYF-5 | JGI | ISS | |
| PF00010 | PFAM | Helix-loop-helix DNA-binding domain | JGI | ISS | |
| UniRef100_G7LH18 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor bHLH96 n=1 Tax=Medicago truncatula RepID=G7LH18_MEDTR | SoyBase | E_val: 3.00E-145 | ISS |
| UniRef100_I1KX21 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KX21_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g36590 not represented in the dataset |
Glyma08g36590 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g271000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g36590.1 sequence type=CDS gene model=Glyma08g36590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACTTTGGAAACTCTTCAATCCAATGAGTTCTCCAACTTCATTATCTATGACACTATCTCTGCAACTCCATTTAGCAGCCATGGCTCCCCAGAGGCTAGTTTCTTGGAAAGTTTTGTGAACTATCAGGAGCAGCATGACCACCCTACATTTGATAATTGCGCAATGAGGACCCGAAAGCGTGAAGCCAGCGAACCAGAAAGCATTGGCCGGAGGCAGAATTCGGTGGCAGTGCAAGGGAGGAAGAAGAGGAGAAGGAAGCCAAGGGTTTGCAAAAACACGGAAGAGGCTGAGACACAAAGGATCACACACATTACAGTGGAAAGAAACCGCCGGAAGCAGATGAATGAGCATCTTGCTGTCCTTCGTTCACTCATGCCGGAGTCCTACGTCCAAAGGGGTGACCAGGCCTCTATAGTGGGTGGTGCCATAGAGTTTGTAAAAGAGCTGGAGCACCTCTTGCAATCACTTGAAGCTAGAAAGCTGCAACTTTTGCACCAAGAAGTGGCACAAACCAATGAAAATACGGCCATTTCCAAACTCATGCAACCTCCTTTTGCACATTGTTTTTCGTATCCACAGTACACATGGTCCCAGACTCCTAACAAATACACATCCAAGACCAAAGCTGCCATAGCTGATATCGAGGTTACTTTAATCGAGACCCATGCAAATCTTCGAATTCTCACCAGGAGAAGCAGCCACGGGCAGCTAACAAAGTTAGTAGCTGGTTTTCAAACGCTGTGCCTCACCGTCCTACATCTTAATGTCACCACCATAGACCCTTTGGTGTTCTATTCCTTCAGTGCTAAGGTTGAAGAAGGATTCCAACTTGGTTCAGTAGATGGTATTGCAACGGCAGTCCATCATTTGCTTGCAAGAATTGAAGAAGAGGCTTCCCTTTGCTGTTGA
>Glyma08g36590.1 sequence type=predicted peptide gene model=Glyma08g36590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTLETLQSNEFSNFIIYDTISATPFSSHGSPEASFLESFVNYQEQHDHPTFDNCAMRTRKREASEPESIGRRQNSVAVQGRKKRRRKPRVCKNTEEAETQRITHITVERNRRKQMNEHLAVLRSLMPESYVQRGDQASIVGGAIEFVKELEHLLQSLEARKLQLLHQEVAQTNENTAISKLMQPPFAHCFSYPQYTWSQTPNKYTSKTKAAIADIEVTLIETHANLRILTRRSSHGQLTKLVAGFQTLCLTVLHLNVTTIDPLVFYSFSAKVEEGFQLGSVDGIATAVHHLLARIEEEASLCC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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