Glyma08g36580 - SoyBase

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Report for Sequence Feature Glyma08g36580

Feature Type:	gene_model
Chromosome:	Gm08
Start:	34670528
stop:	34676310
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g36580

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G17910	AT	Annotation by Michelle Graham. TAIR10: transferases, transferring acyl groups \| chr4:9951322-9953689 REVERSE LENGTH=434	SoyBase	E_val: 3.00E-163	ISS
GO:0006506	GO-bp	Annotation by Michelle Graham. GO Biological Process: GPI anchor biosynthetic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005789	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0016746	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups	SoyBase	N/A	ISS
KOG0411	KOG	Uncharacterized membrane protein	JGI		ISS
PTHR20661	Panther	GPI-ANCHORED WALL TRANSFER PROTEIN 1	JGI		ISS
PF06423	PFAM	GWT1	JGI		ISS
UniRef100_G7LH17	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GPI-anchored wall transfer protein n=1 Tax=Medicago truncatula RepID=G7LH17_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI00023380C5	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023380C5 related cluster n=1 Tax=unknown RepID=UPI00023380C5	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g36580

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g36580 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g270900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g36580

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g36580

Limit To All Plant Sequences

>Glyma08g36580.3   sequence type=transcript   gene model=Glyma08g36580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGGTTGTTCACTTTAAAAAAGGAAGAATAATCATTCATTTGGAGATCTAGAAATCCAAAGGGTTCAAAATAAATCCAATTCATCGCTGCCATTCTAAGGGAAGGTAGTGCAGTCAGTGTGACTATTGTTCCCCGGTTCCGTTCTCAGTTTGTGTCTTTGAGCCAGAGTTGACCGTTGGATTTCATTCATGGATCTTCCTCTGCCTAAACCCTCCTTCAACCCCAACAAGCATCTCAAAGAAGAATTCGTAAGCAACTTGACCGGATCCTCCATGCTCGAAATCGCGACGCTTACAGTGTCTATTCCCATTCTGGTTCTTATTCGTCACTCCATTTCCATCACTGGTGCCTCACTGAAGAAGAAAAATGATGATGCGCCTTCGGGGAATAGGAATTTAAAATCATACCTAGCCACATTGTCTCTGGACTTCCTTGTCATTGTTGTTCCTATGCTCTTATTTTTCACCGTACTTGCAAACTGGACCTATTTCTTGGCAAGTTTGTTCACTATCTTAACATTGCTTTATATTGCAGTCAAGAGGTCTGGTGGTTCTTCTCCTTCTTTTGAAGGAGAGTCCAACTCTCTTCGGGCATATGTTACTTCATATAGGGTTATTGTGATGATTATAACATTCTTATGCATCTTGGCTGTTGACTTCAGAATATTTCCTAGAAGATATGCAAAGACTGAAACTTACGGAACTAGTTTGATGGATCTTGGGGTTGGAGCATTTGTTTTGGCAAATTCACTAGTTTCTCGGCAAGCACGTAATATCACATCGGTAAGCTGGAAGACTGCAATAGTTTCAACTAGTCCACTGATCATCTTAGGATTTCTTCGTCTTGTTACTACGACTGGTGTGGATTATCAGGTACATGTGGGTGAATATGGTGTACATTGGAATTTCTTCTTCACACTTGCTGCTGTGTCAATCCTTACTTCCTTTATTAATATTTCCCCTCAATATTCTGGAGTTATTGGTTCACTTGTACTAGTAGGGTACCAGTTCTGCTTGGTGCAAGGTTTAAATCATTACTTGCTTTCTAATGAAAGAGGAATGGATATCATAAGTCAAAACAAGGAGGGGATTTTTAGCATATTTGGATACTGGGGAATGTACCTTCTTGGTGTTCATTTGGGAAACTATCTTATCTTCGGAAGCCATTCCTCTGGATTTAGAAGTAGCAGATGGGTACGGATGAGGGTTTGGGTTCTCTCCATCCTGTTTTGGTTATTAACTGTGCTTCTAGACAGGCATGTCGAAAGAATTTCTCGGAGAACTTGCAATCTTCCATATGTTACTATGGTAGTGGCTGACAATCTACAGCTTATGCTGTCTCAATCTGTACCATAACCCAAATTTCCCAGCACGGCACTCTTGAGTTATCCTTGACATTCTGCTATCAATTCTAATGCTAGCCGATCTTGTTCCTGGAAGTAAAACTTCAATACTTGAAGAAGCATTCAATCGGAACCTACTGGCTACATTTCTACTGGCAAATATTCTCACTGGGTTGGTAAACTTGTCTGTTGATACCCTCTCTGCGTCATCAATCACTGCCTTTTTTATCTTGCTTGTCTATGCTTATGTTTTATCAATTGTAATTGGTATTGCAGATTATTTTGGTATTAAATTAAAATTTTGGTGATGCAGTCAATTGCTATGCTGCAGTAGTATGTTTTGTTAGTGTTATTATTTATTTTAAAAGAACATCTCTTTTTATTAATCATTAATTGAATTTACTATAAAAC

Coding sequences of Glyma08g36580

Limit To All Plant Sequences

>Glyma08g36580.2   sequence type=CDS   gene model=Glyma08g36580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCTTCCTCTGCCTAAACCCTCCTTCAACCCCAACAAGCATCTCAAAGAAGAATTCGTAAGCAACTTGACCGGATCCTCCATGCTCGAAATCGCGACGCTTACAGTGTCTATTCCCATTCTGGTTCTTATTCGTCACTCCATTTCCATCACTGGTGCCTCACTGAAGAAGAAAAATGATGATGCGCCTTCGGGGAATAGGAATTTAAAATCATACCTAGCCACATTGTCTCTGGACTTCCTTGTCATTGTTGTTCCTATGCTCTTATTTTTCACCGTACTTGCAAACTGGACCTATTTCTTGGCAAGTTTGTTCACTATCTTAACATTGCTTTATATTGCAGTCAAGAGGTCTGGTGGTTCTTCTCCTTCTTTTGAAGGAGAGTCCAACTCTCTTCGGGCATATGTTACTTCATATAGGGTTATTGTGATGATTATAACATTCTTATGCATCTTGGCTGTTGACTTCAGAATATTTCCTAGAAGATATGCAAAGACTGAAACTTACGGAACTAGTTTGATGGATCTTGGGGTTGGAGCATTTGTTTTGGCAAATTCACTAGTTTCTCGGCAAGCACGTAATATCACATCGGTAAGCTGGAAGACTGCAATAGTTTCAACTAGTCCACTGATCATCTTAGGATTTCTTCGTCTTGTTACTACGACTGGTGTGGATTATCAGGTACATGTGGGTGAATATGGTGTACATTGGAATTTCTTCTTCACACTTGCTGCTGTGTCAATCCTTACTTCCTTTATTAATATTTCCCCTCAATATTCTGGAGTTATTGGTTCACTTGTACTAGTAGGGTACCAGTTCTGCTTGGTGCAAGGTTTAAATCATTACTTGCTTTCTAATGAAAGAGGAATGGATATCATAAGTCAAAACAAGGAGGGGATTTTTAGCATATTTGGATACTGGGGAATGTACCTTCTTGGTGTTCATTTGGGAAACTATCTTATCTTCGGAAGCCATTCCTCTGGATTTAGAAGTAGCAGATGGGTACGGATGAGGGTTTGGGTTCTCTCCATCCTGTTTTGGTTATTAACTGTGCTTCTAGACAGGCATGTCGAAAGAATTTCTCGGAGAACTTGCAATCTTCCATATGTTACTATGGTAGTGGCTGACAATCTACAGCTGCTATCAATTCTAATGCTAGCCGATCTTGTTCCTGGAAGTAAAACTTCAATACTTGAAGAAGCATTCAATCGGAACCTACTGGCTACATTTCTACTGGCAAATATTCTCACTGGGTTGGTAAACTTGTCTGTTGATACCCTCTCTGCGTCATCAATCACTGCCTTTTTTATCTTGCTTGTCTATGCTTATGTTTTATCAATTGTAATTGGTATTGCAGATTATTTTGGTATTAAATTAAAATTTTGGTGA

>Glyma08g36580.3   sequence type=CDS   gene model=Glyma08g36580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCTTCCTCTGCCTAAACCCTCCTTCAACCCCAACAAGCATCTCAAAGAAGAATTCGTAAGCAACTTGACCGGATCCTCCATGCTCGAAATCGCGACGCTTACAGTGTCTATTCCCATTCTGGTTCTTATTCGTCACTCCATTTCCATCACTGGTGCCTCACTGAAGAAGAAAAATGATGATGCGCCTTCGGGGAATAGGAATTTAAAATCATACCTAGCCACATTGTCTCTGGACTTCCTTGTCATTGTTGTTCCTATGCTCTTATTTTTCACCGTACTTGCAAACTGGACCTATTTCTTGGCAAGTTTGTTCACTATCTTAACATTGCTTTATATTGCAGTCAAGAGGTCTGGTGGTTCTTCTCCTTCTTTTGAAGGAGAGTCCAACTCTCTTCGGGCATATGTTACTTCATATAGGGTTATTGTGATGATTATAACATTCTTATGCATCTTGGCTGTTGACTTCAGAATATTTCCTAGAAGATATGCAAAGACTGAAACTTACGGAACTAGTTTGATGGATCTTGGGGTTGGAGCATTTGTTTTGGCAAATTCACTAGTTTCTCGGCAAGCACGTAATATCACATCGGTAAGCTGGAAGACTGCAATAGTTTCAACTAGTCCACTGATCATCTTAGGATTTCTTCGTCTTGTTACTACGACTGGTGTGGATTATCAGGTACATGTGGGTGAATATGGTGTACATTGGAATTTCTTCTTCACACTTGCTGCTGTGTCAATCCTTACTTCCTTTATTAATATTTCCCCTCAATATTCTGGAGTTATTGGTTCACTTGTACTAGTAGGGTACCAGTTCTGCTTGGTGCAAGGTTTAAATCATTACTTGCTTTCTAATGAAAGAGGAATGGATATCATAAGTCAAAACAAGGAGGGGATTTTTAGCATATTTGGATACTGGGGAATGTACCTTCTTGGTGTTCATTTGGGAAACTATCTTATCTTCGGAAGCCATTCCTCTGGATTTAGAAGTAGCAGATGGGTACGGATGAGGGTTTGGGTTCTCTCCATCCTGTTTTGGTTATTAACTGTGCTTCTAGACAGGCATGTCGAAAGAATTTCTCGGAGAACTTGCAATCTTCCATATGTTACTATGGTAGTGGCTGACAATCTACAGCTTATGCTGTCTCAATCTGTACCATAA

Predicted protein sequences of Glyma08g36580

Limit To All Plant Sequences

>Glyma08g36580.2   sequence type=predicted peptide   gene model=Glyma08g36580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLPLPKPSFNPNKHLKEEFVSNLTGSSMLEIATLTVSIPILVLIRHSISITGASLKKKNDDAPSGNRNLKSYLATLSLDFLVIVVPMLLFFTVLANWTYFLASLFTILTLLYIAVKRSGGSSPSFEGESNSLRAYVTSYRVIVMIITFLCILAVDFRIFPRRYAKTETYGTSLMDLGVGAFVLANSLVSRQARNITSVSWKTAIVSTSPLIILGFLRLVTTTGVDYQVHVGEYGVHWNFFFTLAAVSILTSFINISPQYSGVIGSLVLVGYQFCLVQGLNHYLLSNERGMDIISQNKEGIFSIFGYWGMYLLGVHLGNYLIFGSHSSGFRSSRWVRMRVWVLSILFWLLTVLLDRHVERISRRTCNLPYVTMVVADNLQLLSILMLADLVPGSKTSILEEAFNRNLLATFLLANILTGLVNLSVDTLSASSITAFFILLVYAYVLSIVIGIADYFGIKLKFW*

>Glyma08g36580.3   sequence type=predicted peptide   gene model=Glyma08g36580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLPLPKPSFNPNKHLKEEFVSNLTGSSMLEIATLTVSIPILVLIRHSISITGASLKKKNDDAPSGNRNLKSYLATLSLDFLVIVVPMLLFFTVLANWTYFLASLFTILTLLYIAVKRSGGSSPSFEGESNSLRAYVTSYRVIVMIITFLCILAVDFRIFPRRYAKTETYGTSLMDLGVGAFVLANSLVSRQARNITSVSWKTAIVSTSPLIILGFLRLVTTTGVDYQVHVGEYGVHWNFFFTLAAVSILTSFINISPQYSGVIGSLVLVGYQFCLVQGLNHYLLSNERGMDIISQNKEGIFSIFGYWGMYLLGVHLGNYLIFGSHSSGFRSSRWVRMRVWVLSILFWLLTVLLDRHVERISRRTCNLPYVTMVVADNLQLMLSQSVP*

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