Glyma08g36520 - SoyBase

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Report for Sequence Feature Glyma08g36520

Feature Type:	gene_model
Chromosome:	Gm08
Start:	34503014
stop:	34515028
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g36520

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G23910	AT	Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein \| chr2:10177902-10179789 FORWARD LENGTH=304	SoyBase	E_val: 1.00E-83	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0009809	GO-bp	Annotation by Michelle Graham. GO Biological Process: lignin biosynthetic process	SoyBase	N/A	ISS
GO:0009813	GO-bp	Annotation by Michelle Graham. GO Biological Process: flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0010224	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to UV-B	SoyBase	N/A	ISS
GO:0044237	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular metabolic process	SoyBase	N/A	ISS
GO:0080167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to karrikin	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0016621	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cinnamoyl-CoA reductase activity	SoyBase	N/A	ISS
GO:0050662	GO-mf	Annotation by Michelle Graham. GO Molecular Function: coenzyme binding	SoyBase	N/A	ISS
KOG1502	KOG	Flavonol reductase/cinnamoyl-CoA reductase	JGI		ISS
PTHR10366	Panther	NAD DEPENDENT EPIMERASE/DEHYDRATASE	JGI		ISS
PTHR10366:SF9	Panther	NAD(P)H STEROID DEHYDROGENASE-RELATED	JGI		ISS
PF01073	PFAM	3-beta hydroxysteroid dehydrogenase/isomerase family	JGI		ISS
UniRef100_G7KDR3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Dihydroflavonol-4-reductase n=2 Tax=Medicago truncatula RepID=G7KDR3_MEDTR	SoyBase	E_val: 9.00E-168	ISS
UniRef100_I1KX15	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KX15_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g36520

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g36520 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g270600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g36520

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g36520

Limit To All Plant Sequences

>Glyma08g36520.1   sequence type=CDS   gene model=Glyma08g36520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCCCTCGTTCGATCAAAGTGCAAGCACAGTTTGCGTGATGGATGCTTCGGGTCAGCTAGGTGCCAGTCTGGTCCAACAATTACTTCTACGGGGATACCATGTCCATGCCTCTGTTCAATCACATGGGAACGAGCAACTCAATGGGATTTCTGCTGACCCCAATAGGCTCAAGATTTTCCATTTAGACCCATTTGATTACCATAGCATAACCGATGCTCTAAGAGGCTGCTCTGGCTTGTTTTATGTATTTGAACCACCTCAGGACCAACCCTACTATGATGAATACATAGCAGACGTAGAGGTCAGAGCAGCACACAATGTGATTGAAGCTTGCGCTCAAACAGAAACAATAGATAAAGTGGTTTTCACTTCATCTGCAACAGCTGTCGTTTGGAGGGAGGATCGCAAAGCCATGGAATCGAACATGGATGAGAAACATTGGAGTGATATCAATTTCTGTCGGAAGTTCAAGCTATGGCACGGGATGTCAAAGACAATGGCAGAGAGGACAGCGTGGGCCCTAGCAATGGACAGAGAGGTGAACATGGTGTCCATAAACGCAGGCTTGTTGATGAGTAGTGACCAACACCAAGATCTCTGCATCCAAAAAAACCCCTACCTCAGAGGAGCTTCGGAGATGTACGAAGATGGCGTGTTGGTGACCGTAGACTTAGGAATCTTGGTGGATACCCACATCTGTGTTTACGAAGATATCTCATCCTATGGTCGCTACTTGTGCTTCAACCACGTCATCAACACCCAACACGACGCCGTTCAGCTCGCCCACAAGACTACCACCCCTCTAAGCTGTGACCCAGGGAAAGAGTTTATCCAACAAAGAATAAGCAACAAGAAATTGAACGAACTGATGGTCAATTTTGTGAGTTGA

Predicted protein sequences of Glyma08g36520

Limit To All Plant Sequences

>Glyma08g36520.1   sequence type=predicted peptide   gene model=Glyma08g36520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPSFDQSASTVCVMDASGQLGASLVQQLLLRGYHVHASVQSHGNEQLNGISADPNRLKIFHLDPFDYHSITDALRGCSGLFYVFEPPQDQPYYDEYIADVEVRAAHNVIEACAQTETIDKVVFTSSATAVVWREDRKAMESNMDEKHWSDINFCRKFKLWHGMSKTMAERTAWALAMDREVNMVSINAGLLMSSDQHQDLCIQKNPYLRGASEMYEDGVLVTVDLGILVDTHICVYEDISSYGRYLCFNHVINTQHDAVQLAHKTTTPLSCDPGKEFIQQRISNKKLNELMVNFVS*

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