|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT1G69120 | AT | Annotation by Michelle Graham. TAIR10: K-box region and MADS-box transcription factor family protein | chr1:25982576-25986102 REVERSE LENGTH=256 | SoyBase | E_val: 4.00E-118 | ISS |
GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
GO:0009556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microsporogenesis | SoyBase | N/A | ISS |
GO:0009827 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification | SoyBase | N/A | ISS |
GO:0009860 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen tube growth | SoyBase | N/A | ISS |
GO:0009886 | GO-bp | Annotation by Michelle Graham. GO Biological Process: post-embryonic morphogenesis | SoyBase | N/A | ISS |
GO:0009908 | GO-bp | Annotation by Michelle Graham. GO Biological Process: flower development | SoyBase | N/A | ISS |
GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
GO:0009933 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem structural organization | SoyBase | N/A | ISS |
GO:0010076 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maintenance of floral meristem identity | SoyBase | N/A | ISS |
GO:0010093 | GO-bp | Annotation by Michelle Graham. GO Biological Process: specification of floral organ identity | SoyBase | N/A | ISS |
GO:0010582 | GO-bp | Annotation by Michelle Graham. GO Biological Process: floral meristem determinacy | SoyBase | N/A | ISS |
GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
GO:0048440 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carpel development | SoyBase | N/A | ISS |
GO:0048441 | GO-bp | Annotation by Michelle Graham. GO Biological Process: petal development | SoyBase | N/A | ISS |
GO:0048443 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stamen development | SoyBase | N/A | ISS |
GO:0048481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ovule development | SoyBase | N/A | ISS |
GO:0048507 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem development | SoyBase | N/A | ISS |
GO:0052543 | GO-bp | Annotation by Michelle Graham. GO Biological Process: callose deposition in cell wall | SoyBase | N/A | ISS |
GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
GO:0046982 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein heterodimerization activity | SoyBase | N/A | ISS |
KOG0014 | KOG | MADS box transcription factor | JGI | ISS | |
PTHR11945 | Panther | MADS BOX PROTEIN | JGI | ISS | |
PTHR11945:SF19 | Panther | MADS BOX PROTEIN | JGI | ISS | |
PF00319 | PFAM | SRF-type transcription factor (DNA-binding and dimerisation domain) | JGI | ISS | |
PF01486 | PFAM | K-box region | JGI | ISS | |
UniRef100_E1CKY3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: APETALA1 n=1 Tax=Vigna unguiculata RepID=E1CKY3_VIGUN | SoyBase | E_val: 8.00E-169 | ISS |
UniRef100_UPI0002338403 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002338403 related cluster n=1 Tax=unknown RepID=UPI0002338403 | SoyBase | E_val: 1.00E-174 | ISS |
Glyma08g36380 not represented in the dataset |
Glyma08g36380 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.08g269800 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g36380.1 sequence type=CDS gene model=Glyma08g36380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAAGGGGTAGGGTTCAGCTGAAGAGGATAGAGAACAAGATCAATCGGCAAGTAACTTTCTCCAAAAGGAGAGCTGGGTTACTCAAGAAAGCACATGAGATCTCTGTGCTCTGTGATGCTGAGGTCGCTTTGATTGTCTTCTCCCACAAAGGAAAGCTCTTTGAATATGCCACTGATTCTTGCATGGAGAAGATACTGGAACGCTATGAAAGGTACGCATATGCAGAGAGACAACTTGTTGCAAATGATTCCGAGACACAGGGAAATTGGACCATTGAGTATACTAGACTCAAGGCAAAGATTGACCTTTTGCAGAGAAATCATAGGCACTATATGGGAGAAGATTTAGGTTCAATGAGCCTCAAAGAGCTTCAGAGTCTGGAGCAGCAGTTAGATACTGCTCTCAAGCAAATTCGTACCCGCAGAAACCAACTCATGTACGAGTCCATTTCGGAGCTTGAGAAGAAGGAGAAAGTGATACAGGAGCAGAATAACATGCTTGCAAAGAAGATCAAGGAGAAAGAAAAGGTTGCAGCTTCGCAGGCACAATGGGAGCATCCAAACCACGGAGTTAATGCATCTTTCTTGCTACCGCAGCCACTTTTGAACATGGGTGGCAATTACCATGATGAAGCACCAGAAGTAGGGAGGCATGAACTTGACCTGACTCTGGAACCATTATATTCCTGTCACCTTGGATGCTTTTGA
>Glyma08g36380.1 sequence type=predicted peptide gene model=Glyma08g36380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYATDSCMEKILERYERYAYAERQLVANDSETQGNWTIEYTRLKAKIDLLQRNHRHYMGEDLGSMSLKELQSLEQQLDTALKQIRTRRNQLMYESISELEKKEKVIQEQNNMLAKKIKEKEKVAASQAQWEHPNHGVNASFLLPQPLLNMGGNYHDEAPEVGRHELDLTLEPLYSCHLGCF*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||