Glyma08g36370 - SoyBase

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Report for Sequence Feature Glyma08g36370

Feature Type:	gene_model
Chromosome:	Gm08
Start:	34167541
stop:	34177659
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g36370

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G13580	AT	Annotation by Michelle Graham. TAIR10: LAG1 longevity assurance homolog 3 \| chr1:4645006-4646765 REVERSE LENGTH=308	SoyBase	E_val: 2.00E-176	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0016126	GO-bp	Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process	SoyBase	N/A	ISS
GO:0042761	GO-bp	Annotation by Michelle Graham. GO Biological Process: very long-chain fatty acid biosynthetic process	SoyBase	N/A	ISS
GO:0046520	GO-bp	Annotation by Michelle Graham. GO Biological Process: sphingoid biosynthetic process	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0050291	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sphingosine N-acyltransferase activity	SoyBase	N/A	ISS
KOG1607	KOG	Protein transporter of the TRAM (translocating chain-associating membrane) superfamily	JGI		ISS
PTHR12560	Panther	LONGEVITY ASSURANCE FACTOR 1 (LAG1)	JGI		ISS
PF03798	PFAM	TLC domain	JGI		ISS
UniRef100_I1KX09	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KX09_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q8W4Y5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ASC1-like protein n=1 Tax=Solanum lycopersicum RepID=ASCL_SOLLC	SoyBase	E_val: 3.00E-175	ISS

Expression Patterns of Glyma08g36370

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g36370 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g269700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g36370

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g36370

Limit To All Plant Sequences

>Glyma08g36370.2   sequence type=transcript   gene model=Glyma08g36370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGCAAAAAGGGCATTTAAGTCAGACTAAACTCAATAATAGGAAACACGCAACAAGTGGGGGTGGCGAGCGGAATATGATATATATGATATATTGATATATCATAACAATAATCCCAAAATATTAAGGGTACTGTTTTCGATTCGATCAACTCACTCACGCGCACGCCTTTCATTCCATTCCATTCCGATGCGATGACGACGACGAATTCCCTCTTCTTCTCCCTTGACTGGCACAATGAATTCTATCCTACCTATCATGATTTCTACCTTCTCCCCCTTTTCGCTCTCTTCTTCCCTTCCCTTCGCTTCTTTCTCGACCGATTCATATTCGAGAAAGTGGCGAGACGGTTGATTTTCGGAAAGGGGCATGCGGCGCTGGACTACCATTCAGACGAGAGAAGAAAAAAGATTAGGAAATTTAAGGAATCAGCTTGGAAATGTGTTTATTATCTTTCAGCTGAGATTCTTGCTTTGTCTGTAACATACGATGAACCATGGTTTACAAATACTAGAAACTTTTGGGTGGGCCCAGGGACCCAGGTCTGGCCAGATCAAAAGATCAAGTTGAAATTGAAGGCAGTCTATATGTACGCTGCTGGATTTTACTCATACTCCATTTTTGCTTTGATATTTTGGGAAACGAGGCGCTCCGACTTTGGAGTGTCCATGAGTCATCATGTTGCTACTGTAATTCTCATTGTTCTGTCTTACATTTTCAGGTTTGCACGTGTTGGATCAGTGGTTTTAGCACTTCATGATGCTAGCGATGTGTTTCTGGAGATAGGGAAAATGTCCAAATACAGTGGTGCTGAAACTATGGCTAGCTTTGCTTTTATTCTATTTGTTTTATCTTGGATCATATTGCGTCTCATTTACTACCCATTCTGGATTCTTTGGAGTACAAGCTATGAAGTTCTGCTCACCTTGGATAAGGAAAAGCACCAAGTGGATGGTCCAATATATTATTATGTGTTCAATAGTCTTCTTTACTGCTTGCTTGTTATGCATATTTATTGGTGGGTGCTGATATTTCGGATGCTTGTTAAACAAATCCAAGCAAGAGGAAAAGTTAGTGAAGATGTTCGATCTGATTCAGAAGATGAAGATGAACATGAAGATTGAGTAGGGAAGCAAAAGCACAATGTATTCTTTAGGCAAAGATGATTTGGTTAGCTTCAATCGTTTTCTGTGCCTTTGGCCACAAAGCTAATTTCAAATGTTAATCAAATTGAGAGGATTGTATTTATACGGATTCGAGTACAGACTTCGGAGCTGGTATAAAATGACAACAGATGAATAGAATTTTGATTCTTCTAAACTATGGGACTAGCACCTCCTGAAGTTTAGGTGTACTTCCTGACATTTGGTGAAGATATTTTGACTTTCTTGATTATTTGTCCATCGATCAAATTACAAGTTGTGTGTCCATTAATGTTTTCTGCCATAGATGTTGTCCTCTTGGTTTTCATTTATCGGAGACGGAAATTACTGGACTTAAAAAGCAAAAGGAAAAACCTACTATAAATTAGTTTGCTAGTTGATTCTGATAATGTTCTGCTTTTTAGATGCTTTGTTGTCACATTTATGACCGTTAGTAAAGGAGGAAATGTGGCGAAGGATTGAATTTAGCAACAAAATATTGCAGCAGGGTCTTAAAGCTTTGATTCGGTGGTACCAAATCTGGCCACAAACTCATTATCATATTTACAATTTAATGTTGTGTGCAGACAATGTTAAAAGAAAAGAAAAATACCAACAACAGTTGACACACGTGATAGCAGCTTGTGTCTCTTAACCAAATGGTCCTGAGTT

Coding sequences of Glyma08g36370

Limit To All Plant Sequences

>Glyma08g36370.1   sequence type=CDS   gene model=Glyma08g36370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGACGACGAATTCCCTCTTCTTCTCCCTTGACTGGCACAATGAATTCTATCCTACCTATCATGATTTCTACCTTCTCCCCCTTTTCGCTCTCTTCTTCCCTTCCCTTCGCTTCTTTCTCGACCGATTCATATTCGAGAAAGTGGCGAGACGGTTGATTTTCGGAAAGGGGCATGCGGCGCTGGACTACCATTCAGACGAGAGAAGAAAAAAGATTAGGAAATTTAAGGAATCAGCTTGGAAATGTGTTTATTATCTTTCAGCTGAGATTCTTGCTTTGTCTGTAACATACGATGAACCATGGTTTACAAATACTAGAAACTTTTGGGTGGGCCCAGGGACCCAGGTCTGGCCAGATCAAAAGATCAAGTTGAAATTGAAGGCAGTCTATATGTACGCTGCTGGATTTTACTCATACTCCATTTTTGCTTTGATATTTTGGGAAACGAGGCGCTCCGACTTTGGAGTGTCCATGAGTCATCATGTTGCTACTGTAATTCTCATTGTTCTGTCTTACATTTTCAGGTTTGCACGTGTTGGATCAGTGGTTTTAGCACTTCATGATGCTAGCGATGTGTTTCTGGAGATAGGGAAAATGTCCAAATACAGTGGTGCTGAAACTATGGCTAGCTTTGCTTTTATTCTATTTGTTTTATCTTGGATCATATTGCGTCTCATTTACTACCCATTCTGGATTCTTTGGAGTACAAGCTATGAAGTTCTGCTCACCTTGGATAAGGAAAAGCACCAAGTGGATGGTCCAATATATTATTATGTGTTCAATAGTCTTCTTTACTGCTTGCTTGTTATGCATATTTATTGGTGGGTGCTGATATTTCGGATGCTTGTTAAACAAATCCAAGCAAGAGGAAAAGTTAGTGAAGATGTTCGATCTGATTCAGAAGATGAAGATGAACATGAAGATTGA

>Glyma08g36370.2   sequence type=CDS   gene model=Glyma08g36370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGACGACGAATTCCCTCTTCTTCTCCCTTGACTGGCACAATGAATTCTATCCTACCTATCATGATTTCTACCTTCTCCCCCTTTTCGCTCTCTTCTTCCCTTCCCTTCGCTTCTTTCTCGACCGATTCATATTCGAGAAAGTGGCGAGACGGTTGATTTTCGGAAAGGGGCATGCGGCGCTGGACTACCATTCAGACGAGAGAAGAAAAAAGATTAGGAAATTTAAGGAATCAGCTTGGAAATGTGTTTATTATCTTTCAGCTGAGATTCTTGCTTTGTCTGTAACATACGATGAACCATGGTTTACAAATACTAGAAACTTTTGGGTGGGCCCAGGGACCCAGGTCTGGCCAGATCAAAAGATCAAGTTGAAATTGAAGGCAGTCTATATGTACGCTGCTGGATTTTACTCATACTCCATTTTTGCTTTGATATTTTGGGAAACGAGGCGCTCCGACTTTGGAGTGTCCATGAGTCATCATGTTGCTACTGTAATTCTCATTGTTCTGTCTTACATTTTCAGGTTTGCACGTGTTGGATCAGTGGTTTTAGCACTTCATGATGCTAGCGATGTGTTTCTGGAGATAGGGAAAATGTCCAAATACAGTGGTGCTGAAACTATGGCTAGCTTTGCTTTTATTCTATTTGTTTTATCTTGGATCATATTGCGTCTCATTTACTACCCATTCTGGATTCTTTGGAGTACAAGCTATGAAGTTCTGCTCACCTTGGATAAGGAAAAGCACCAAGTGGATGGTCCAATATATTATTATGTGTTCAATAGTCTTCTTTACTGCTTGCTTGTTATGCATATTTATTGGTGGGTGCTGATATTTCGGATGCTTGTTAAACAAATCCAAGCAAGAGGAAAAGTTAGTGAAGATGTTCGATCTGATTCAGAAGATGAAGATGAACATGAAGATTGA

Predicted protein sequences of Glyma08g36370

Limit To All Plant Sequences

>Glyma08g36370.1   sequence type=predicted peptide   gene model=Glyma08g36370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTTTNSLFFSLDWHNEFYPTYHDFYLLPLFALFFPSLRFFLDRFIFEKVARRLIFGKGHAALDYHSDERRKKIRKFKESAWKCVYYLSAEILALSVTYDEPWFTNTRNFWVGPGTQVWPDQKIKLKLKAVYMYAAGFYSYSIFALIFWETRRSDFGVSMSHHVATVILIVLSYIFRFARVGSVVLALHDASDVFLEIGKMSKYSGAETMASFAFILFVLSWIILRLIYYPFWILWSTSYEVLLTLDKEKHQVDGPIYYYVFNSLLYCLLVMHIYWWVLIFRMLVKQIQARGKVSEDVRSDSEDEDEHED*

>Glyma08g36370.2   sequence type=predicted peptide   gene model=Glyma08g36370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTTTNSLFFSLDWHNEFYPTYHDFYLLPLFALFFPSLRFFLDRFIFEKVARRLIFGKGHAALDYHSDERRKKIRKFKESAWKCVYYLSAEILALSVTYDEPWFTNTRNFWVGPGTQVWPDQKIKLKLKAVYMYAAGFYSYSIFALIFWETRRSDFGVSMSHHVATVILIVLSYIFRFARVGSVVLALHDASDVFLEIGKMSKYSGAETMASFAFILFVLSWIILRLIYYPFWILWSTSYEVLLTLDKEKHQVDGPIYYYVFNSLLYCLLVMHIYWWVLIFRMLVKQIQARGKVSEDVRSDSEDEDEHED*

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