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Report for Sequence Feature Glyma08g36350

Feature Type:gene_model
Chromosome:Gm08
Start:34133485
stop:34141308
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g36350
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G57030AT Annotation by Michelle Graham. TAIR10: Calcium-dependent phosphotriesterase superfamily protein | chr3:21101653-21103204 REVERSE LENGTH=374 SoyBaseE_val: 1.00E-98ISS
GO:0009058GO-bp Annotation by Michelle Graham. GO Biological Process: biosynthetic process SoyBaseN/AISS
GO:0009821GO-bp Annotation by Michelle Graham. GO Biological Process: alkaloid biosynthetic process SoyBaseN/AISS
GO:0005783GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009505GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016844GO-mf Annotation by Michelle Graham. GO Molecular Function: strictosidine synthase activity SoyBaseN/AISS
KOG1520 KOG Predicted alkaloid synthase/Surface mucin Hemomucin JGI ISS
PTHR10426Panther STRICTOSIDINE SYNTHASE-RELATED JGI ISS
PTHR10426:SF5Panther MUCIN-RELATED JGI ISS
PF03088PFAM Strictosidine synthase JGI ISS
UniRef100_B9RLB4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Strictosidine synthase, putative n=1 Tax=Ricinus communis RepID=B9RLB4_RICCO SoyBaseE_val: 3.00E-121ISS
UniRef100_I1KX07UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KX07_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g36350
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g36350 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g269600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g36350
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g36350
>Glyma08g36350.1   sequence type=CDS   gene model=Glyma08g36350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGCAATCCACTCTATTCCTGTTCCTATTCCTATTCCCCCTCGTTCATGCTCTTTCTTACGAAGCTGCTTATATTAGAGATGGCCTCAAATCCTATTCCCAGCTTGATCTCCCTCACTCCGTTTTTGGTTCTGAAAGTGTAGCCTTCGATTGCCATGGGAAAGGACCATATGTTGGAGTGTCTGATGGTAGAATTCTCAAGTGGCAAGAGACAAAGAGAGAGTGGATTGACTTTGCAGTTACCTCGCCACACAGGAACAAGAAATTATGCGACGGGTTACAAAATGACAAGATGGAATCAATGTGTGGAAGACCCTTAGGCCTCAAATTCAACACTGTAACTTGTGAACTGTACATTGCCGATGCATACTTTGGGCTTCTGGTGGTAGGACCAAGTGGTGGTGTGGCAAAGCAATTAGCCACTTCTGCTGAAGGGGTCCCATTTAGGTTCACAAATGCCTTGGACATCGACACCAAAACTGGTGAAGTATATTTCACAGATAGCAGCATCTTGTTCCAAAGAAGGGTATACATATCAATAATTCTGAGCGGGGATAGAACTGGAAGGTTACTAAAATACGTTCCAAGTACCCAAAGTGTACATGTTTTGGTCAAAGGTTTAGCGTTCCCTAACGGTGTGGCACTTAGCAAGGACAATTCCTTCATTCTAGTAGCAGAATCAACCACTTTTAAAATTCTCAAGATTCAACTTAGAGACTCCAAGACCAACAACAACAACAATATAGAGCCTTTTGCTCAGGTTCCACGCTCCCCAGATAACATAAAGAGGAACAACAAAGGAGAATTTTGGGTGGCACAGAACAGTGGCAGGGGATTGATTCAGAAATTGGGAAATGAAATTGAAACCACACTTCCTTGGAATGCAGATCCTGTGGCAATTAAATTTGATGAAAAGGGGAGGGCCATTGTGGTATTAGATGGAGAATATGGAAGACAATTGGACTCTGTTAGTGAAGTGGAAGAACATGAAGGAAGTTTGTGGATAGGCTCTGCTGTGCAACCATTCATTGGTCTTATAAAAGCTTAG
Predicted protein sequences of Glyma08g36350
>Glyma08g36350.1   sequence type=predicted peptide   gene model=Glyma08g36350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKQSTLFLFLFLFPLVHALSYEAAYIRDGLKSYSQLDLPHSVFGSESVAFDCHGKGPYVGVSDGRILKWQETKREWIDFAVTSPHRNKKLCDGLQNDKMESMCGRPLGLKFNTVTCELYIADAYFGLLVVGPSGGVAKQLATSAEGVPFRFTNALDIDTKTGEVYFTDSSILFQRRVYISIILSGDRTGRLLKYVPSTQSVHVLVKGLAFPNGVALSKDNSFILVAESTTFKILKIQLRDSKTNNNNNIEPFAQVPRSPDNIKRNNKGEFWVAQNSGRGLIQKLGNEIETTLPWNADPVAIKFDEKGRAIVVLDGEYGRQLDSVSEVEEHEGSLWIGSAVQPFIGLIKA*






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