Glyma08g36280 - SoyBase

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Report for Sequence Feature Glyma08g36280

Feature Type:	gene_model
Chromosome:	Gm08
Start:	34085149
stop:	34091230
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g36280

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G48670	AT	Annotation by Michelle Graham. TAIR10: XH/XS domain-containing protein \| chr3:18031240-18033615 FORWARD LENGTH=647	SoyBase	E_val: 0	ISS
GO:0006306	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA methylation	SoyBase	N/A	ISS
GO:0006342	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin silencing	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR21596	Panther	RIBONUCLEASE P PROTEIN SUBUNIT P38-RELATED	JGI		ISS
PTHR21596:SF3	Panther	TRANSCRIPTION FACTOR X1-LIKE	JGI		ISS
PF03468	PFAM	XS domain	JGI		ISS
PF03469	PFAM	XH domain	JGI		ISS
PF03470	PFAM	XS zinc finger domain	JGI		ISS
UniRef100_G7KBR6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor X1-like protein n=1 Tax=Medicago truncatula RepID=G7KBR6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KX05	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KX05_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g36280

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g36280 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g269000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g36280

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g36280

Limit To All Plant Sequences

>Glyma08g36280.3   sequence type=transcript   gene model=Glyma08g36280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTTTCTAGAAGCTTCCGATTCTTCATTTCGCAGGTCAATCTCTCTCTGTATGCTTGGATTTCTCTCATGCATGTGCTCTTCATTGTGTTTTCTATCAGCTTGCTTGCATATTAGGGCTTTCTGTAATGTATGCTTCAATGTTTCAATGCTGCTCAATATGAATACTCTATGGCCCTTTTTCAGTGTGGGAAAGTTGTTGCATCATGTTAATCTGAATGCTTTGGAGAAACTGTAATGGCTCACAGCAGTTCTGAGAATGATACTGATATTAGTGAATCTGAAATTAGTGAGTATAAAGATAAAACTTATCAAGAGCTGAAAAGTGGAAGTCAGAAAGTGAAAAACTTGGATGAGACTTTCACTTGTCCCTACTGCCCTAAAAGGAGAAAAAGAGATGATTATTCATACAAGGAACTCCTTCAACATGCTTCTGGGGTGGGTCGGAGTAGCTCAAAGAAGAGAAAGGCAAGAGACAAGGCTAATCATTTGGCTTTGGTGAAGTATTTGGAGAAAGATCTTGTGAGTGTAGATATTCCAGCCGAAGTTTCAAAACCGGAAGATGAAAGTGGTACTTCTGTTAATTCTGATGAGCAATTTGTGTGGCCTTGGATTGGAATTGTAGTTAATATTCCAACTAGATTGACAGGAGATGGACACAGTGTTGGGGAGAGTGGTACCGGGCTGAGGGACGAGTACAAAAGCAGGGGTTTCAATCCGGTTCGAGTCACTCCTTTGTGGAATTTCCGGGGTCACTCTGGAATTGCTCTTGTGGAATTCAACAAAGACTGGTCAGGCTTGGATAATGCGTTGGCATTTGAAAGGGAATATGAATTAGATCATCATGGGAAAAAGGACTGGTTTGCAAATTCTGAGCAGAAGTCTGGCCTTTATGCATGGGTCGCCCGAGCAGATGACCACGGAATGAAAAATATCTATGGAGAACATCTACAAAAGATGTGCGATGTCAAAACCATATCTCAACTTATGGAAGAAGAAGCTCGAAGGCAGGATAAACTTGTCTCCACTTTGACTAATGTTATTCAGGTCAAGAACCAGCACATAAAAGAGATTGAAGTGAAATGCCATGAGACTACGCATAAAATGGACCTTGCTATGATGGAAAAAGATAAACTTATTCAAGCTTATAATGCAGAGATAAAGAAAATACAGTCAAGTGCCACGGATCACCTCAAGAAGATTTTTACTGATCATGAAAAGCTTAAATTGCAACTGAAATCTCAGAAAAACGAGCTTGAGCTGCGGAAAGTTGAATTGGAAAAACGTGAGGCACATAATGAAAGTGAAAGAAAAAAGTTGACAAAAGAAATCATGGAGAATGCAATGAAAAATAGCTCTCTTCAGATGGCTACTCTGGAGCAAAAGAAAGCTGATGAAAATGTTATGAAACTGGCTGAAGATCAAAAGAGACAAAAAGAACAACTTCATGCTAAAATCATTCAGCTTCAAAAACAACTTGATAAGAAACAAGAGCTTGAGTTGGAGATTCAGCAATTAAAAGGATCATTAAATGTGTTGAAGCACATGGATGATTATGAAGATGCAGAAGTTCTGAAGAAGGTAGATACTTTACAAAAGGATTTAAGAGACAAGGAACAGTCACTCCAAGACTTAGATGAATTGAACCAAGCACTAATCATTAAAGAGCGTGAGAGTAATGATGAGCTGCAGGAAGCTAGACAAGCATTGGTTGATGGTATTAAAGAGCTATCATCTCATGGCAATATTTGTTTGAAGAGAATGGGGGAACTGGACACTAGACCATTCCTTGAAGCAATGAAGAAAAGATATAATGAGGAGGAAGCTGAAGAGAGAACTGCAGATATGTGCTCATTGTGGGAAGAGCTTCTAAGGAACCCAGATTGGCATCCATTCAAAGTTATCATGGTTGAAGGGAAAGAAAAGGAAATCATTAGAGATGACGATGAAAAGCTGAATGAGTTGAAAAATGACTTGGGTGAAGGGGCATATAAAGCAGTGGTACAAGCATTGTTAGAGATAAATGAACATAATCCTAGTGGGCGATACTTAACCTCCGTAGTATGGAACTATAAAGAAAAAAGGAGAGCAACGCTGAAAGAAGGAGTACATTTTCTGTTGAATCAATGGATAGTTCGTAAACGCAAGAGAGGAATGACCTGAAGCTTTGTGGATAATAACTGTGATAGGTTACTGCATTTGTCTTTTGAACTTTATAGCTATAGGTAAATCTTAGAAAGAAAAAGATTTTAAAAGCTATTAGTATATGTAGTTATAAGTGTTAATGGATTTTAACAACCACCTAGAAGTTAGCCTTTGTATACTCTGGTGTGGAAGAAGACATTGAAGTTATACTTGTATGACCTATCAAATTGGCTTTAATTTTAGCATGTTACTTTGAGTAATTGGCATCTTGGTATCAAGAGTATATTTTATTGATCATGATGCAACTAAAATTGTCTATACTAAGTCTTATAAAAGAGTTGTCTAGGG

Coding sequences of Glyma08g36280

Limit To All Plant Sequences

>Glyma08g36280.2   sequence type=CDS   gene model=Glyma08g36280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCACAGCAGTTCTGAGAATGATACTGATATTAGTGAATCTGAAATTAGTGAGTATAAAGATAAAACTTATCAAGAGCTGAAAAGTGGAAGTCAGAAAGTGAAAAACTTGGATGAGACTTTCACTTGTCCCTACTGCCCTAAAAGGAGAAAAAGAGATGATTATTCATACAAGGAACTCCTTCAACATGCTTCTGGGGTGGGTCGGAGTAGCTCAAAGAAGAGAAAGGCAAGAGACAAGGCTAATCATTTGGCTTTGGTGAAGTATTTGGAGAAAGATCTTGTGAGTGTAGATATTCCAGCCGAAGTTTCAAAACCGGAAGATGAAAGTGGTACTTCTGTTAATTCTGATGAGCAATTTGTGTGGCCTTGGATTGGAATTGTAGTTAATATTCCAACTAGATTGACAGGAGATGGACACAGTGTTGGGGAGAGTGGTACCGGGCTGAGGGACGAGTACAAAAGCAGGGGTTTCAATCCGGTTCGAGTCACTCCTTTGTGGAATTTCCGGGGTCACTCTGGAATTGCTCTTGTGGAATTCAACAAAGACTGGTCAGGCTTGGATAATGCGTTGGCATTTGAAAGGGAATATGAATTAGATCATCATGGGAAAAAGGACTGGTTTGCAAATTCTGAGCAGAAGTCTGGCCTTTATGCATGGGTCGCCCGAGCAGATGACCACGGAATGAAAAATATCTATGGAGAACATCTACAAAAGATGTGCGATGTCAAAACCATATCTCAACTTATGGAAGAAGAAGCTCGAAGGCAGGATAAACTTGTCTCCACTTTGACTAATGTTATTCAGGTCAAGAACCAGCACATAAAAGAGATTGAAGTGAAATGCCATGAGACTACGCATAAAATGGACCTTGCTATGATGGAAAAAGATAAACTTATTCAAGCTTATAATGCAGAGATAAAGAAAATACAGTCAAGTGCCACGGATCACCTCAAGAAGATTTTTACTGATCATGAAAAGCTTAAATTGCAACTGAAATCTCAGAAAAACGAGCTTGAGCTGCGGAAAGTTGAATTGGAAAAACGTGAGGCACATAATGAAAGTGAAAGAAAAAAGTTGACAAAAGAAATCATGGAGAATGCAATGAAAAATAGCTCTCTTCAGATGGCTACTCTGGAGCAAAAGAAAGCTGATGAAAATGTTATGAAACTGGCTGAAGATCAAAAGAGACAAAAAGAACAACTTCATGCTAAAATCATTCAGCTTCAAAAACAACTTGATAAGAAACAAGAGCTTGAGTTGGAGATTCAGCAATTAAAAGGATCATTAAATGTGTTGAAGCACATGGATGATTATGAAGATGCAGAAGTTCTGAAGAAGGTAGATACTTTACAAAAGGATTTAAGAGACAAGGAACAGTCACTCCAAGACTTAGATGAATTGAACCAAGCACTAATCATTAAAGAGCGTGAGAGTAATGATGAGCTGCAGGAAGCTAGACAAGCATTGGTTGATGGTATTAAAGAGCTATCATCTCATGGCAATATTTGTTTGAAGAGAATGGGGGAACTGGACACTAGACCATTCCTTGAAGCAATGAAGAAAAGATATAATGAGGAGGAAGCTGAAGAGAGAACTGCAGATATGTGCTCATTGTGGGAAGAGCTTCTAAGGAACCCAGATTGGCATCCATTCAAAGTTATCATGGTTGAAGGGAAAGAAAAGGAAATCATTAGAGATGACGATGAAAAGCTGAATGAGTTGAAAAATGACTTGGGTGAAGGGGCATATAAAGCAGTGGTACAAGCATTGTTAGAGATAAATGAACATAATCCTAGTGGGCGATACTTAACCTCCGTAGTATGGAACTATAAAGAAAAAAGGAGAGCAACGCTGAAAGAAGGAGTACATTTTCTGTTGAATCAATGGATAGTTCGTAAACGCAAGAGAGGAATGACCTGA

>Glyma08g36280.3   sequence type=CDS   gene model=Glyma08g36280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCACAGCAGTTCTGAGAATGATACTGATATTAGTGAATCTGAAATTAGTGAGTATAAAGATAAAACTTATCAAGAGCTGAAAAGTGGAAGTCAGAAAGTGAAAAACTTGGATGAGACTTTCACTTGTCCCTACTGCCCTAAAAGGAGAAAAAGAGATGATTATTCATACAAGGAACTCCTTCAACATGCTTCTGGGGTGGGTCGGAGTAGCTCAAAGAAGAGAAAGGCAAGAGACAAGGCTAATCATTTGGCTTTGGTGAAGTATTTGGAGAAAGATCTTGTGAGTGTAGATATTCCAGCCGAAGTTTCAAAACCGGAAGATGAAAGTGGTACTTCTGTTAATTCTGATGAGCAATTTGTGTGGCCTTGGATTGGAATTGTAGTTAATATTCCAACTAGATTGACAGGAGATGGACACAGTGTTGGGGAGAGTGGTACCGGGCTGAGGGACGAGTACAAAAGCAGGGGTTTCAATCCGGTTCGAGTCACTCCTTTGTGGAATTTCCGGGGTCACTCTGGAATTGCTCTTGTGGAATTCAACAAAGACTGGTCAGGCTTGGATAATGCGTTGGCATTTGAAAGGGAATATGAATTAGATCATCATGGGAAAAAGGACTGGTTTGCAAATTCTGAGCAGAAGTCTGGCCTTTATGCATGGGTCGCCCGAGCAGATGACCACGGAATGAAAAATATCTATGGAGAACATCTACAAAAGATGTGCGATGTCAAAACCATATCTCAACTTATGGAAGAAGAAGCTCGAAGGCAGGATAAACTTGTCTCCACTTTGACTAATGTTATTCAGGTCAAGAACCAGCACATAAAAGAGATTGAAGTGAAATGCCATGAGACTACGCATAAAATGGACCTTGCTATGATGGAAAAAGATAAACTTATTCAAGCTTATAATGCAGAGATAAAGAAAATACAGTCAAGTGCCACGGATCACCTCAAGAAGATTTTTACTGATCATGAAAAGCTTAAATTGCAACTGAAATCTCAGAAAAACGAGCTTGAGCTGCGGAAAGTTGAATTGGAAAAACGTGAGGCACATAATGAAAGTGAAAGAAAAAAGTTGACAAAAGAAATCATGGAGAATGCAATGAAAAATAGCTCTCTTCAGATGGCTACTCTGGAGCAAAAGAAAGCTGATGAAAATGTTATGAAACTGGCTGAAGATCAAAAGAGACAAAAAGAACAACTTCATGCTAAAATCATTCAGCTTCAAAAACAACTTGATAAGAAACAAGAGCTTGAGTTGGAGATTCAGCAATTAAAAGGATCATTAAATGTGTTGAAGCACATGGATGATTATGAAGATGCAGAAGTTCTGAAGAAGGTAGATACTTTACAAAAGGATTTAAGAGACAAGGAACAGTCACTCCAAGACTTAGATGAATTGAACCAAGCACTAATCATTAAAGAGCGTGAGAGTAATGATGAGCTGCAGGAAGCTAGACAAGCATTGGTTGATGGTATTAAAGAGCTATCATCTCATGGCAATATTTGTTTGAAGAGAATGGGGGAACTGGACACTAGACCATTCCTTGAAGCAATGAAGAAAAGATATAATGAGGAGGAAGCTGAAGAGAGAACTGCAGATATGTGCTCATTGTGGGAAGAGCTTCTAAGGAACCCAGATTGGCATCCATTCAAAGTTATCATGGTTGAAGGGAAAGAAAAGGAAATCATTAGAGATGACGATGAAAAGCTGAATGAGTTGAAAAATGACTTGGGTGAAGGGGCATATAAAGCAGTGGTACAAGCATTGTTAGAGATAAATGAACATAATCCTAGTGGGCGATACTTAACCTCCGTAGTATGGAACTATAAAGAAAAAAGGAGAGCAACGCTGAAAGAAGGAGTACATTTTCTGTTGAATCAATGGATAGTTCGTAAACGCAAGAGAGGAATGACCTGA

Predicted protein sequences of Glyma08g36280

Limit To All Plant Sequences

>Glyma08g36280.2   sequence type=predicted peptide   gene model=Glyma08g36280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAHSSSENDTDISESEISEYKDKTYQELKSGSQKVKNLDETFTCPYCPKRRKRDDYSYKELLQHASGVGRSSSKKRKARDKANHLALVKYLEKDLVSVDIPAEVSKPEDESGTSVNSDEQFVWPWIGIVVNIPTRLTGDGHSVGESGTGLRDEYKSRGFNPVRVTPLWNFRGHSGIALVEFNKDWSGLDNALAFEREYELDHHGKKDWFANSEQKSGLYAWVARADDHGMKNIYGEHLQKMCDVKTISQLMEEEARRQDKLVSTLTNVIQVKNQHIKEIEVKCHETTHKMDLAMMEKDKLIQAYNAEIKKIQSSATDHLKKIFTDHEKLKLQLKSQKNELELRKVELEKREAHNESERKKLTKEIMENAMKNSSLQMATLEQKKADENVMKLAEDQKRQKEQLHAKIIQLQKQLDKKQELELEIQQLKGSLNVLKHMDDYEDAEVLKKVDTLQKDLRDKEQSLQDLDELNQALIIKERESNDELQEARQALVDGIKELSSHGNICLKRMGELDTRPFLEAMKKRYNEEEAEERTADMCSLWEELLRNPDWHPFKVIMVEGKEKEIIRDDDEKLNELKNDLGEGAYKAVVQALLEINEHNPSGRYLTSVVWNYKEKRRATLKEGVHFLLNQWIVRKRKRGMT*

>Glyma08g36280.3   sequence type=predicted peptide   gene model=Glyma08g36280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAHSSSENDTDISESEISEYKDKTYQELKSGSQKVKNLDETFTCPYCPKRRKRDDYSYKELLQHASGVGRSSSKKRKARDKANHLALVKYLEKDLVSVDIPAEVSKPEDESGTSVNSDEQFVWPWIGIVVNIPTRLTGDGHSVGESGTGLRDEYKSRGFNPVRVTPLWNFRGHSGIALVEFNKDWSGLDNALAFEREYELDHHGKKDWFANSEQKSGLYAWVARADDHGMKNIYGEHLQKMCDVKTISQLMEEEARRQDKLVSTLTNVIQVKNQHIKEIEVKCHETTHKMDLAMMEKDKLIQAYNAEIKKIQSSATDHLKKIFTDHEKLKLQLKSQKNELELRKVELEKREAHNESERKKLTKEIMENAMKNSSLQMATLEQKKADENVMKLAEDQKRQKEQLHAKIIQLQKQLDKKQELELEIQQLKGSLNVLKHMDDYEDAEVLKKVDTLQKDLRDKEQSLQDLDELNQALIIKERESNDELQEARQALVDGIKELSSHGNICLKRMGELDTRPFLEAMKKRYNEEEAEERTADMCSLWEELLRNPDWHPFKVIMVEGKEKEIIRDDDEKLNELKNDLGEGAYKAVVQALLEINEHNPSGRYLTSVVWNYKEKRRATLKEGVHFLLNQWIVRKRKRGMT*

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