SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G26120 | AT | Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein | chr1:9028656-9031402 REVERSE LENGTH=476 | SoyBase | E_val: 1.00E-101 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0000139 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi membrane | SoyBase | N/A | ISS |
| GO:0005789 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum membrane | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| PTHR11559 | Panther | CARBOXYLESTERASE | JGI | ISS | |
| PTHR11559:SF87 | Panther | ACETYLCHOLINESTERASE | JGI | ISS | |
| PF00135 | PFAM | Carboxylesterase | JGI | ISS | |
| UniRef100_B9RL97 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Catalytic, putative n=1 Tax=Ricinus communis RepID=B9RL97_RICCO | SoyBase | E_val: 2.00E-106 | ISS |
| UniRef100_UPI00023380BE | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023380BE related cluster n=1 Tax=unknown RepID=UPI00023380BE | SoyBase | E_val: 3.00E-135 | ISS |
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Glyma08g36221 not represented in the dataset |
Glyma08g36221 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g268600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g36221.1 sequence type=CDS gene model=Glyma08g36221 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCATTGCCCTCCGTCTCTGTTGACACTGCCTCCACCACCACCACCGCCACCGCCACCACCACTAGGTCTTCCCTCGGCCGTGAGGTTGCCTCTGAGACCTTTCTCTTGACTCGCCTCGGCTTCAAGATGCTCCGATATCTCGAGGTAGGCTATAAATGGATTACAAGATTTCTTGCCCTTGGTTGTTATGCAGTACTGCTTTTCCCAGGCTTTATTCAAGTTGGATATTACTATTTCTTCTCCAATCAGATACGCAGAAGCATAGTTTATGGAGATAAACCACGAAATAGGCTTGACTTGTATTTACCTAAAAATAGCAATGGTACCAAACCAGTTGTTGCTTTTGTTACTGGTGGGGCCAGGATTATTGGTTACAAAGCATGGGGTTCTCTTTTAGGTCAACAGTTATCAGACAGAGATATCATTGTGGCATGCATAGATTACAGGGAACCATCAGTGATGATATATGATGCTTCTCAAGGCATCTCATTTGTGTGCAACAATATTGCAGAATATGGAGGTGACCCTAACAGGAATTTACCTAATGGCCTGGGGCAGTCAGCTGGGGCACATATTGCTGCATGTGCAATTGTGGAGCAGGCAATCAAAGAGGCAGGTGAAGGAGAGAGTACTTCTTGGAGTCTTTCCCAAATTAAGACTTATTTTGGTTTATCTGGAGGGTAA
>Glyma08g36221.1 sequence type=predicted peptide gene model=Glyma08g36221 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high SLPSVSVDTASTTTTATATTTRSSLGREVASETFLLTRLGFKMLRYLEVGYKWITRFLALGCYAVLLFPGFIQVGYYYFFSNQIRRSIVYGDKPRNRLDLYLPKNSNGTKPVVAFVTGGARIIGYKAWGSLLGQQLSDRDIIVACIDYREPSVMIYDASQGISFVCNNIAEYGGDPNRNLPNGLGQSAGAHIAACAIVEQAIKEAGEGESTSWSLSQIKTYFGLSGG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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