SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G18220 | AT | Annotation by Michelle Graham. TAIR10: Drug/metabolite transporter superfamily protein | chr4:10078768-10080109 FORWARD LENGTH=344 | SoyBase | E_val: 2.00E-106 | ISS |
| GO:0015931 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleobase-containing compound transport | SoyBase | N/A | ISS |
| GO:0005345 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: purine nucleobase transmembrane transporter activity | SoyBase | N/A | ISS |
| PF03151 | PFAM | Triose-phosphate Transporter family | JGI | ISS | |
| UniRef100_C6T847 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6T847_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_O49726 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Probable purine permease 9 n=1 Tax=Arabidopsis thaliana RepID=PUP9_ARATH | SoyBase | E_val: 4.00E-108 | ISS |
|
Glyma08g36190 not represented in the dataset |
Glyma08g36190 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g268500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g36190.2 sequence type=CDS gene model=Glyma08g36190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATGAGTCAACAATAAGTAACAAAAAAAGATACTACCATTGGCTCATAATAGCCATCCATTCTTCACTTGTGTTGGTGTGTGCATCAGCAACAATAATCCTCAGAAGATTGTACTATGAAAAGGGTGGAAAAAGCAAATGGATGGGAACACTTGTTCAACTTGCTGGTTTCCCAATTCAGCTTCCTGTTTACTTCTTTTTAGCACCCAAAAATCTCACCACAAATAATAGCATTCATCCAAAACAACCATCAGTTTCAATGCTATCATTTATCTATGTCTCAATTGGCCTACTCGTGGCATTAGATCGTTATTTATATTCAGTTGGACTATGGTACCTTCCTGTTTCTACCTATTCACTCATTTGCTCATCCCAGTTGGCTTTCAATGCTTTCTTCTCCTACTTCCTCAACTCACTCAAGTTCACACCTTACATAATCAACTCTCTAGTCCTTCTCACCATTTCCTCAACCCTTCTTGTGTATCAAAATGAGTCATCATTAGATGATGATGATGATTCAGATTCCACAAAAATCTCCAAGAAAAAGTATGTGATTGGATTCATATGCACAATTGGTGCATTTGCAGGGTATGGACTATGGCTTTCCATTACACAACTTGTGTTCAAGAAGGTCATAAAAAGAGAAACTTTCAAAGTGGTCTTGGATATGATATCATACCCTTCCCTTGTAGCTACCCTTGTTACCTTAGTAAGACTTTTTGCTAGTGGAGAGTGGAGTGGTTTGAAAGATGAAATGAAGGGGTATGAGATGCGAAAGGCTTCATATTTGTTGAACCACACTTTCACTGCCATACTTTGGCAAGTTTCTTCACTCTTCTCTAATGCCATAAGCGCTTTGGGAGTGTCTATTGTTCCAATGTTGGCAGTGTTGTTCTTTCATGACAAAATGGATGGCATTAAGGGTATCTCTATGGTGCTAGCTATTTGGGGCATTGTATAA
>Glyma08g36190.2 sequence type=predicted peptide gene model=Glyma08g36190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNESTISNKKRYYHWLIIAIHSSLVLVCASATIILRRLYYEKGGKSKWMGTLVQLAGFPIQLPVYFFLAPKNLTTNNSIHPKQPSVSMLSFIYVSIGLLVALDRYLYSVGLWYLPVSTYSLICSSQLAFNAFFSYFLNSLKFTPYIINSLVLLTISSTLLVYQNESSLDDDDDSDSTKISKKKYVIGFICTIGAFAGYGLWLSITQLVFKKVIKRETFKVVLDMISYPSLVATLVTLVRLFASGEWSGLKDEMKGYEMRKASYLLNHTFTAILWQVSSLFSNAISALGVSIVPMLAVLFFHDKMDGIKGISMVLAIWGIV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
