Glyma08g36160 - SoyBase

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Report for Sequence Feature Glyma08g36160

Feature Type:	gene_model
Chromosome:	Gm08
Start:	33807608
stop:	33809596
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g36160

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G16890	AT	Annotation by Michelle Graham. TAIR10: pentatricopeptide (PPR) domain protein 40 \| chr3:5768401-5770380 REVERSE LENGTH=659	SoyBase	E_val: 0	ISS
GO:0006979	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to oxidative stress	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0042775	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitochondrial ATP synthesis coupled electron transport	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_B9RZM2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RZM2_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1KWZ9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1KWZ9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g36160

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g36160 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g268300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g36160

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g36160

Limit To All Plant Sequences

>Glyma08g36160.1   sequence type=CDS   gene model=Glyma08g36160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTCTTCAACTTCAACCCTTCTTCAGGCACATCAAGCCCCCAAACCAAACCCCCTCCACCAACCTCATTCCCCCAAAACCCTTAAACCCTCTCCAAACACCCCCTTCTTCTCCTTCTTCACCCCCCATCGACCATCTATACATTTCACAGCTCCTCTCAAGACCCGATTGGGCCGTGCTTCTAAACCACGACCTCTCCTCAAAGACTCTACTCCTCAACCCTAGTTACGCCGTAAGCATCTTCCAGAACCAACAAAACCCCTCCCACGCCATCAAGTTCCACTCCTGGCTCTCCCACGTCAACCCTACATTGGCAGCACACAACTCCGTGCACCGCGCCTTGCGGAACACGCTGCACCGAAAAGGCCCCGCGCTTCTCTCCGTCGACTTGCTCCGGGAGCTTCGCAATTTAGGGTTTCGCGTCACGGAGGACCTGCTCTGCGCTTTGTTAGCAAGTTGGGGAAGGCTAGGTTTAGCAAATTACTCTGCTCACGTCTTCTGTCAGATCTCGTTCCTCGGTCTTTCCCCCACCACTAGGTTATACAATGCTCTCATTGATGCTTTAGTGAAATCAAATTCAATTGACCTTGCTTATTTGAAGTTCCAACAGATGGCGGCGGATAATTGTGTTGCCGATAGGTTTACGTACAACACACTCATTCACGGGGTTTGCAAGGTTGGGGTGGTCGATGAGGCGCTCCGGTTAGTTAGACAAATGAAGGATAAGGGACATTTTCCTAATGTGTTCACTTATACAATGCTGATTGAAGGGTTCTGTATCGCGAGCAGGGTTGATGAGGCCTTTGGAGTTTTTGAGACAATGAAGGATAGTGGGGTTTATCCAAATGAAGCCACTGTAAGAGCATTGGTTCACGGGGTTTTTCGCTGCGTGGATCCTAGTAAGGCACTTGAGTTGTTATCTGAGTTTTTAGATAGGGAGCAGGAGCAGGAGCGCGTTCATTTTATGGTTCTGGGAAGAGGAGGTTATTTCCCTGGTAACTCTGTTTTCAATGTCGTAATGGCTTGTTTGGTTAAGGGAGCTGAGCTGAGAGAGACGTGTGATGTATTTGAAATTTTAAGAAAGCAAGGTGTGAAGGCAGGCATTGGTGCTTATCTTGCGCTTATTGAAGTATTATACAAGAATGAATGGAGAGAGGAGGGGGATCGAGTTTATGGTCAATTGATTAGTGATGGGCTAATTTCAAATGTCTTCTCATATAACATGATAATTAATTGCTTCTGCAGAGCCAAATTGATGGATAATGCGTCTGAGGCTTTCAGAGACATGCAGGTTAGAGGCGTTGTTCCCAATCTTGTTACTTTCAATACACTTATTAATGGCCATTGCAAGGATGGAGCAATAGATAAGGCACGGAAGCTTCTGGAGAGCCTTTTAGAAAATGGACTTAAACCTGATATCTTCACTTTTAGCTCTATAGTTGATGGACTCTGTCAAATAAAAAGGACCGAGGAAGCTCTTGAATGCTTTACTGAGATGATTGAGTGGGGCATCAATCCAAATGCCGTCATTTACAATATCTTGATTCGATCTTTATGCACCATCGGGGATGTTGCAAGGTCAGTGAAACTTTTAAGAAGAATGCAAAAGGAAGGAATAAGCCCTGACACCTACTCCTATAATGCTTTGATTCAAATCTTCTGTAGGATGAATAAAGTTGAGAAAGCTAAAAAGCTTTTTGATTCAATGTCAAGATCTGGCTTAAATCCAGACAATTACACTTACAGTGCTTTTATAGAGGCACTGTCTGAATCTGGGAGATTAGAGGAAGCCAAGAAGATGTTTTACTCAATGGAGGCAAATGGTTGCTCACCCGACTCATATATATGTAACCTAATTATTAAAATATTGGTTCAACAGGAATATGTTGAAGAGGCTCAAAACATCATAGAA

Predicted protein sequences of Glyma08g36160

Limit To All Plant Sequences

>Glyma08g36160.1   sequence type=predicted peptide   gene model=Glyma08g36160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPLQLQPFFRHIKPPNQTPSTNLIPPKPLNPLQTPPSSPSSPPIDHLYISQLLSRPDWAVLLNHDLSSKTLLLNPSYAVSIFQNQQNPSHAIKFHSWLSHVNPTLAAHNSVHRALRNTLHRKGPALLSVDLLRELRNLGFRVTEDLLCALLASWGRLGLANYSAHVFCQISFLGLSPTTRLYNALIDALVKSNSIDLAYLKFQQMAADNCVADRFTYNTLIHGVCKVGVVDEALRLVRQMKDKGHFPNVFTYTMLIEGFCIASRVDEAFGVFETMKDSGVYPNEATVRALVHGVFRCVDPSKALELLSEFLDREQEQERVHFMVLGRGGYFPGNSVFNVVMACLVKGAELRETCDVFEILRKQGVKAGIGAYLALIEVLYKNEWREEGDRVYGQLISDGLISNVFSYNMIINCFCRAKLMDNASEAFRDMQVRGVVPNLVTFNTLINGHCKDGAIDKARKLLESLLENGLKPDIFTFSSIVDGLCQIKRTEEALECFTEMIEWGINPNAVIYNILIRSLCTIGDVARSVKLLRRMQKEGISPDTYSYNALIQIFCRMNKVEKAKKLFDSMSRSGLNPDNYTYSAFIEALSESGRLEEAKKMFYSMEANGCSPDSYICNLIIKILVQQEYVEEAQNIIE

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