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Report for Sequence Feature Glyma08g36136

Feature Type:gene_model
Chromosome:Gm08
Start:33750172
stop:33750939
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G52100AT Annotation by Michelle Graham. TAIR10: Dihydrodipicolinate reductase, bacterial/plant | chr5:21170203-21172107 FORWARD LENGTH=298 SoyBaseE_val: 9.00E-50ISS
GO:0009089GO-bp Annotation by Michelle Graham. GO Biological Process: lysine biosynthetic process via diaminopimelate SoyBaseN/AISS
GO:0009773GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthetic electron transport in photosystem I SoyBaseN/AISS
GO:0009965GO-bp Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis SoyBaseN/AISS
GO:0010103GO-bp Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis SoyBaseN/AISS
GO:0010207GO-bp Annotation by Michelle Graham. GO Biological Process: photosystem II assembly SoyBaseN/AISS
GO:0016556GO-bp Annotation by Michelle Graham. GO Biological Process: mRNA modification SoyBaseN/AISS
GO:0019684GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction SoyBaseN/AISS
GO:0030154GO-bp Annotation by Michelle Graham. GO Biological Process: cell differentiation SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0008839GO-mf Annotation by Michelle Graham. GO Molecular Function: dihydrodipicolinate reductase activity SoyBaseN/AISS
GO:0070402GO-mf Annotation by Michelle Graham. GO Molecular Function: NADPH binding SoyBaseN/AISS
PTHR20836Panther DIHYDRODIPICOLINATE REDUCTASE JGI ISS
PF05173PFAM Dihydrodipicolinate reductase, C-terminus JGI ISS
UniRef100_G7IAQ3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Dihydrodipicolinate reductase n=1 Tax=Medicago truncatula RepID=G7IAQ3_MEDTR SoyBaseE_val: 2.00E-53ISS
UniRef100_I1LDU7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LDU7_SOYBN SoyBaseE_val: 5.00E-59ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g36136 not represented in the dataset

Glyma08g36136 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g268200 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma08g36136.1   sequence type=CDS   gene model=Glyma08g36136   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAATTGGTGGAAAGAATATTATTTATTTGTCAAGGTTTCATGATATCAATTATCGATACGTGAAAATGGATCTACCATCAGCAGATGCAAACCAAATTGCCAACAATCTCTCCAACTTGGGTCAAATCTATAATGGAGAAGACCCTTCAACAGATGGCTTGGAAAGGGGTCAAGTCCTAGGAGATGGAATTCGTGTACATAGCATGGTCCTTCCCGAACTTCCTTCTAGTACAACAATTCACTTCTATAGTCCAGGAGAGGTTTACTCTATCAAGCATGATATCATAGATGTGAAGTGTCTCATGCCAGGCTTGCTATTAGCCATTAGAAAAGTAGTGCACCTCAAGAATTTGGTATATGGCTTTGAAAAGTTCATATGA

>Glyma08g36136.1   sequence type=predicted peptide   gene model=Glyma08g36136   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIIGGKNIIYLSRFHDINYRYVKMDLPSADANQIANNLSNLGQIYNGEDPSTDGLERGQVLGDGIRVHSMVLPELPSSTTIHFYSPGEVYSIKHDIIDVKCLMPGLLLAIRKVVHLKNLVYGFEKFI*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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