Glyma08g36090 - SoyBase

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Report for Sequence Feature Glyma08g36090

Feature Type:	gene_model
Chromosome:	Gm08
Start:	33636583
stop:	33638739
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g36090

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G02100	AT	Annotation by Michelle Graham. TAIR10: low-molecular-weight cysteine-rich 69 \| chr2:528397-528885 FORWARD LENGTH=77	SoyBase	E_val: 1.00E-27	ISS
GO:0006952	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0030414	GO-mf	Annotation by Michelle Graham. GO Molecular Function: peptidase inhibitor activity	SoyBase	N/A	ISS
PF00304	PFAM	Gamma-thionin family	JGI		ISS
UniRef100_C1K3M7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Defensin n=1 Tax=Vigna unguiculata RepID=C1K3M7_VIGUN	SoyBase	E_val: 1.00E-42	ISS
UniRef100_UPI00023380B9	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023380B9 related cluster n=1 Tax=unknown RepID=UPI00023380B9	SoyBase	E_val: 4.00E-82	ISS

Expression Patterns of Glyma08g36090

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g36090 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g268000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g36090

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g36090

Limit To All Plant Sequences

>Glyma08g36090.3   sequence type=transcript   gene model=Glyma08g36090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTCACTTTCATTTTGTACCAACCCAACCCAAGCTTGTGCATTCTTTCCTGAAACTTTACTCTCACACACATGGCTCGCTCAGTGCCTTTGGTTTCAACCATTTTTGTCTTGCTTCTTCTTCTGATAGCCACCGAGATGGGGCCAACAATGGTGGCAGAAGCAAGAACTTGTGAGTCTCAGAGCCATCGTTTCAAGGGGCCATGTTTAAGTGACACCAACTGTGGCTCTGTTTGCCGAACCGAAGGTTTCTCTGGAGGACACTGCCGTGGCTTCAGTCGCAGATGCTTCTGCACCAAAGAATGTAATAAAAATAATAATAATTAAGAGTGCTTTGATAGAAGATGATAGATCCATCACCTTTCTACTCGTGTTTGAGAATAAAGGGTTACCCATTCTACTAAGGGTTTGTCTCTTATTTTATTTAGTTAGATCTTTTTATGATATGAGTGAGTGTGAAGGAATTATGTAATCTGTGTTCTTAATTTAATATTTGGATT

Coding sequences of Glyma08g36090

Limit To All Plant Sequences

>Glyma08g36090.2   sequence type=CDS   gene model=Glyma08g36090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCGCTCAGTGCCTTTGGTTTCAACCATTTTTGTCTTGCTTCTTCTTCTGATAGCCACCGAGATGGGGCCAACAATGGTGGCAGAAGCAAGAACTTGTGAGTCTCAGAGCCATCGTTTCAAGGGGCCATGTTTAAGTGACACCAACTGTGGCTCTGTTTGCCGAACCGAAGGTTTCTCTGGAGGACACTGCCGTGGCTTCAGTCGCAGATGCTTCTGCACCAAAGAATATGACAATTATTACAAGTCTTCCGATGTAATAAGGTGTAAAGATGGATCCGGAAAATTCACCAAGGCGCAGTTGAATGATGATATGTGCGATTGTGTTGATGGCACCAATGAACCTGGTTTTTATTTTAATTATGAAATGTTTAATTATTAA

>Glyma08g36090.3   sequence type=CDS   gene model=Glyma08g36090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCGCTCAGTGCCTTTGGTTTCAACCATTTTTGTCTTGCTTCTTCTTCTGATAGCCACCGAGATGGGGCCAACAATGGTGGCAGAAGCAAGAACTTGTGAGTCTCAGAGCCATCGTTTCAAGGGGCCATGTTTAAGTGACACCAACTGTGGCTCTGTTTGCCGAACCGAAGGTTTCTCTGGAGGACACTGCCGTGGCTTCAGTCGCAGATGCTTCTGCACCAAAGAATGTAATAAAAATAATAATAATTAA

Predicted protein sequences of Glyma08g36090

Limit To All Plant Sequences

>Glyma08g36090.2   sequence type=predicted peptide   gene model=Glyma08g36090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MARSVPLVSTIFVLLLLLIATEMGPTMVAEARTCESQSHRFKGPCLSDTNCGSVCRTEGFSGGHCRGFSRRCFCTKEYDNYYKSSDVIRCKDGSGKFTKAQLNDDMCDCVDGTNEPGFYFNYEMFNY*

>Glyma08g36090.3   sequence type=predicted peptide   gene model=Glyma08g36090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MARSVPLVSTIFVLLLLLIATEMGPTMVAEARTCESQSHRFKGPCLSDTNCGSVCRTEGFSGGHCRGFSRRCFCTKECNKNNNN*

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