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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G02100 | AT | Annotation by Michelle Graham. TAIR10: low-molecular-weight cysteine-rich 69 | chr2:528397-528885 FORWARD LENGTH=77 | SoyBase | E_val: 1.00E-27 | ISS |
| GO:0006952 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009505 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall | SoyBase | N/A | ISS |
| GO:0030414 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: peptidase inhibitor activity | SoyBase | N/A | ISS |
| PF00304 | PFAM | Gamma-thionin family | JGI | ISS | |
| UniRef100_C1K3M7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Defensin n=1 Tax=Vigna unguiculata RepID=C1K3M7_VIGUN | SoyBase | E_val: 1.00E-42 | ISS |
| UniRef100_UPI00023380B9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023380B9 related cluster n=1 Tax=unknown RepID=UPI00023380B9 | SoyBase | E_val: 4.00E-82 | ISS |
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Glyma08g36090 not represented in the dataset |
Glyma08g36090 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g268000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g36090.3 sequence type=transcript gene model=Glyma08g36090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTTCACTTTCATTTTGTACCAACCCAACCCAAGCTTGTGCATTCTTTCCTGAAACTTTACTCTCACACACATGGCTCGCTCAGTGCCTTTGGTTTCAACCATTTTTGTCTTGCTTCTTCTTCTGATAGCCACCGAGATGGGGCCAACAATGGTGGCAGAAGCAAGAACTTGTGAGTCTCAGAGCCATCGTTTCAAGGGGCCATGTTTAAGTGACACCAACTGTGGCTCTGTTTGCCGAACCGAAGGTTTCTCTGGAGGACACTGCCGTGGCTTCAGTCGCAGATGCTTCTGCACCAAAGAATGTAATAAAAATAATAATAATTAAGAGTGCTTTGATAGAAGATGATAGATCCATCACCTTTCTACTCGTGTTTGAGAATAAAGGGTTACCCATTCTACTAAGGGTTTGTCTCTTATTTTATTTAGTTAGATCTTTTTATGATATGAGTGAGTGTGAAGGAATTATGTAATCTGTGTTCTTAATTTAATATTTGGATT
>Glyma08g36090.2 sequence type=CDS gene model=Glyma08g36090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCGCTCAGTGCCTTTGGTTTCAACCATTTTTGTCTTGCTTCTTCTTCTGATAGCCACCGAGATGGGGCCAACAATGGTGGCAGAAGCAAGAACTTGTGAGTCTCAGAGCCATCGTTTCAAGGGGCCATGTTTAAGTGACACCAACTGTGGCTCTGTTTGCCGAACCGAAGGTTTCTCTGGAGGACACTGCCGTGGCTTCAGTCGCAGATGCTTCTGCACCAAAGAATATGACAATTATTACAAGTCTTCCGATGTAATAAGGTGTAAAGATGGATCCGGAAAATTCACCAAGGCGCAGTTGAATGATGATATGTGCGATTGTGTTGATGGCACCAATGAACCTGGTTTTTATTTTAATTATGAAATGTTTAATTATTAA >Glyma08g36090.3 sequence type=CDS gene model=Glyma08g36090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCGCTCAGTGCCTTTGGTTTCAACCATTTTTGTCTTGCTTCTTCTTCTGATAGCCACCGAGATGGGGCCAACAATGGTGGCAGAAGCAAGAACTTGTGAGTCTCAGAGCCATCGTTTCAAGGGGCCATGTTTAAGTGACACCAACTGTGGCTCTGTTTGCCGAACCGAAGGTTTCTCTGGAGGACACTGCCGTGGCTTCAGTCGCAGATGCTTCTGCACCAAAGAATGTAATAAAAATAATAATAATTAA
>Glyma08g36090.2 sequence type=predicted peptide gene model=Glyma08g36090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MARSVPLVSTIFVLLLLLIATEMGPTMVAEARTCESQSHRFKGPCLSDTNCGSVCRTEGFSGGHCRGFSRRCFCTKEYDNYYKSSDVIRCKDGSGKFTKAQLNDDMCDCVDGTNEPGFYFNYEMFNY* >Glyma08g36090.3 sequence type=predicted peptide gene model=Glyma08g36090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MARSVPLVSTIFVLLLLLIATEMGPTMVAEARTCESQSHRFKGPCLSDTNCGSVCRTEGFSGGHCRGFSRRCFCTKECNKNNNN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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