Glyma08g35480 - SoyBase

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Report for Sequence Feature Glyma08g35480

Feature Type:	gene_model
Chromosome:	Gm08
Start:	32695410
stop:	32699442
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g35480

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G26570	AT	Annotation by Michelle Graham. TAIR10: Plant protein of unknown function (DUF827) \| chr2:11299565-11302076 FORWARD LENGTH=807	SoyBase	E_val: 1.00E-144	ISS
GO:0009903	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast avoidance movement	SoyBase	N/A	ISS
GO:0009904	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast accumulation movement	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PF05701	PFAM	Plant protein of unknown function (DUF827)	JGI		ISS
UniRef100_B9R7C9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Paramyosin, putative n=1 Tax=Ricinus communis RepID=B9R7C9_RICCO	SoyBase	E_val: 4.00E-144	ISS
UniRef100_I1KWZ1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KWZ1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g35480

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g35480 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g266500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g35480

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g35480

Limit To All Plant Sequences

>Glyma08g35480.2   sequence type=transcript   gene model=Glyma08g35480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGTGGTGGAAAAGGTGACAAATGGTTATCCAAACACTTGAGTATCAATTTGGTTTGGTCGACGAGGCCGTTTATGAGGAACTTTTCATGATTTGGAAACACAAGGAGGAAGCCGTAAACAGATAGATTTGTATTGTTCCTTCCTCCTTCATGAGTCGTCTCCTAAACATTTTACTTCCTTCTTCCACCGTATCGTAGGATAAGACCACTCCTAACACGTTATTATTACCTTTTAATTCCTATTTTCTTTCTATTCTTCCACATTTTCTTCTTTTCCGGGTGTTCCAATTCCTATTCTGATCAAGACCCTGTGAGAAATATTAAAGACGGGCCACTTTCAAAATCCACCATGGAATCCACTTTCAAAGATGCTGTGTCCAAGTTTGGAGGAAGAATTGATTGGAAATCTCGTCGAACCCAGAGTCTGGTGGAGGAGAGAAACAAGCTTGCAGAAGACTTTAGAAAGGAAGAAATTGCTGAGGAATTGGAAAACACTAAGAAGCTGATAGAAGAACTCAAAAATAGCTTAGAAAAGGTAGAAAAAGATGAGCTTGAGGCAAAAAAAGAGGTTGAACATGTGATTCTCAAAATTGAAGAGATGGAGCAAGACATTGCTAGTGAAGCCAGTATTGAAGCCAAGGCAAAACTTGAGGCTAAAAAATCCATGCTTACTGAAGCGCTTTTGGAGTTTGAATTCGTTGAAAGAGAACTGGACTCAGTGCGTAAGGAGTATGCTTCTATGGCGAGTGGAAGGGATATAGCAATCAACAATGCAGAAGAGACTATTGCAACATCCAAGCAGATTGAAAAGGCAGTTGAAGACTTGACTACTGAGTTGATTGCAACAAAAGAGGAGTTGAACTCCACGCGAACCGCGCATTTGGAAGCAGAAGAACAAAGATTAGGAGTTGTTGATCAAGATTCTCACAATTTAAAGTTGGAACTTGAAGGAGTAGAAAAGGAGCTCCAAAGAGTAAATGAGCAAGTTTTGTCAGCCAGGGTTCTAAAATCTAAATTGGAATCAGCTTCCTCCTTACTGCATGATTTAAAAGCTGAATTAGCAACATATATGGAATCAAAAGTAAATGAGGAATGCTATAAAGAACAAAAAGAGAAACTTAAGGAACTAAAGCTAAACATAGAGAAAACAACTTCTGATGTTAACAGCTTGAGGGCGGCTTCTGTGTCGCTAAAATCGAAACTAGAAAAAGAGAAGTCGATTCTCACTTCCCTTAAGAAAAATGAGGAAAAGGCTTTGGCCGTGGTTGCGAATCTCCAAGATGAACTAGAGAAGTCTAGGTTAGCCACAACTTTCATTCAGATGAAAGAGAATGAAGCAAGAAAGATGATGACTGAGTTGCCAAAGAAAGTTCAGAAAGCAGCACAAGAGGCTGATGAGGCCAAATCACTTGCTAAGGCAGCTCAGGAAGAGATGATTGAAGCCCAAGAAGAGCTTGAACAAGCCAAAGCCCAATCAAGCACATTGGAAAGTAGTTTATTGGCAAAACATAAGGAGATAGAAGCAGCCAAGGTTGTTGAGATGTTGGCCAGAGATGCAATCATAACATTGGAGAAGAGTAAATCAGCTGAAGGCAACAAAAATGACAAGGACTCTTCCTCAATGGTGACACTCACACTAGAAGAATATCATGAGCTTAGCAGGAGAGCCTATAAGGCAGAGGAGCAAGCGAACATGAGGATCGAAGCTGCTAATTCTCAGATTCAGATAGCAAGGGAGTCTGAACTAAGAAGCTTGGAGAAGTTAAAAGAACTGAATGAGGAGTTGTCTGTAAGAAGAGAATCTCTCAGCATTGCAACCGAGAATTTCAAAAAGGCCAATGAAGGAAAGTTAGCTGTAGAACATGAATTAAGAACTTGGAGGGCTGAACAAGAGAAACAAAAGAAGCCTGGTGAATTGAATGATGAACAAACTTCTACTCCAACTAAGCCTGCACATGATTCATCAAGCCCTAAGGGAAAAGTTCCTTCAAATAACATTGAAGTTGGATCAGCCTCAGATAAGAACAAAAAGAAGAAGAAGAAGAAGTCATTATTTCCTTCCAAAGTTGTAATGTTCTTTGCCAAGAAAAAAACGCATCCAACCAAGTGAATGTAATCCTTCAACAGAAGGTAGTACACTAAGTAACAAATCTAATTTCTGAACAACTTGTGTATTGGTTGCCAATTGTGATAATTTGTATTAAGTTCTTTGGTTGCAAGGAGAAAATAAGATCATTTAATGTATATATATGGTGTATCTTCTCTATTATTCAATATTT

Coding sequences of Glyma08g35480

Limit To All Plant Sequences

>Glyma08g35480.1   sequence type=CDS   gene model=Glyma08g35480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATCCACTTTCAAAGATGCTGTGTCCAAGTTTGGAGGAAGAATTGATTGGAAATCTCGTCGAACCCAGAGTCTGGTGGAGGAGAGAAACAAGCTTGCAGAAGACTTTAGAAAGGAAGAAATTGCTGAGGAATTGGAAAACACTAAGAAGCTGATAGAAGAACTCAAAAATAGCTTAGAAAAGGTAGAAAAAGATGAGCTTGAGGCAAAAAAAGAGGTTGAACATGTGATTCTCAAAATTGAAGAGATGGAGCAAGACATTGCTAGTGAAGCCAGTATTGAAGCCAAGGCAAAACTTGAGGCTAAAAAATCCATGCTTACTGAAGCGCTTTTGGAGTTTGAATTCGTTGAAAGAGAACTGGACTCAGTGCGTAAGGAGTATGCTTCTATGGCGAGTGGAAGGGATATAGCAATCAACAATGCAGAAGAGACTATTGCAACATCCAAGCAGATTGAAAAGGCAGTTGAAGACTTGACTACTGAGTTGATTGCAACAAAAGAGGAGTTGAACTCCACGCGAACCGCGCATTTGGAAGCAGAAGAACAAAGATTAGGAGTTGTTGATCAAGATTCTCACAATTTAAAGTTGGAACTTGAAGGAGTAGAAAAGGAGCTCCAAAGAGTAAATGAGCAAGTTTTGTCAGCCAGGGTTCTAAAATCTAAATTGGAATCAGCTTCCTCCTTACTGCATGATTTAAAAGCTGAATTAGCAACATATATGGAATCAAAAGTAAATGAGGAATGCTATAAAGAACAAAAAGAGAAACTTAAGGAACTAAAGCTAAACATAGAGAAAACAACTTCTGATGTTAACAGCTTGAGGGCGGCTTCTGTGTCGCTAAAATCGAAACTAGAAAAAGAGAAGTCGATTCTCACTTCCCTTAAGAAAAATGAGGAAAAGGCTTTGGCCGTGGTTGCGAATCTCCAAGATGAACTAGAGAAGTCTAGGTTAGCCACAACTTTCATTCAGATGAAAGAGAATGAAGCAAGAAAGATGATGACTGAGTTGCCAAAGAAAGTTCAGAAAGCAGCACAAGAGGCTGATGAGGCCAAATCACTTGCTAAGGCAGCTCAGGAAGAGATGATTGAAGCCCAAGAAGAGCTTGAACAAGCCAAAGCCCAATCAAGCACATTGGAAAGTAGTTTATTGGCAAAACATAAGGAGATAGAAGCAGCCAAGGTTGTTGAGATGTTGGCCAGAGATGCAATCATAACATTGGAGAAGAGTAAATCAGCTGAAGGCAACAAAAATGACAAGGACTCTTCCTCAATGGTGACACTCACACTAGAAGAATATCATGAGCTTAGCAGGAGAGCCTATAAGGCAGAGGAGCAAGCGAACATGAGGATCGAAGCTGCTAATTCTCAGATTCAGATAGCAAGGGAGTCTGAACTAAGAAGCTTGGAGAAGTTAAAAGAACTGAATGAGGAGTTGTCTGTAAGAAGAGAATCTCTCAGCATTGCAACCGAGAATTTCAAAAAGGCCAATGAAGGAAAGTTAGCTGTAGAACATGAATTAAGAACTTGGAGGGCTGAACAAGAGAAACAAAAGAAGCCTGGTGAATTGAATGATGAACAAACTTCTACTCCAACTAAGCCTGCACATGATTCATCAAGCCCTAAGGGAAAAGTTCCTTCAAATAACATTGAAGTTGGATCAGCCTCAGATAAGAACAAAAAGAAGAAGAAGAAGAAGTCATTATTTCCTTCCAAAGTTGTAATGTTCTTTGCCAAGAAAAAAACGCATCCAACCAAGTGA

>Glyma08g35480.2   sequence type=CDS   gene model=Glyma08g35480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATCCACTTTCAAAGATGCTGTGTCCAAGTTTGGAGGAAGAATTGATTGGAAATCTCGTCGAACCCAGAGTCTGGTGGAGGAGAGAAACAAGCTTGCAGAAGACTTTAGAAAGGAAGAAATTGCTGAGGAATTGGAAAACACTAAGAAGCTGATAGAAGAACTCAAAAATAGCTTAGAAAAGGTAGAAAAAGATGAGCTTGAGGCAAAAAAAGAGGTTGAACATGTGATTCTCAAAATTGAAGAGATGGAGCAAGACATTGCTAGTGAAGCCAGTATTGAAGCCAAGGCAAAACTTGAGGCTAAAAAATCCATGCTTACTGAAGCGCTTTTGGAGTTTGAATTCGTTGAAAGAGAACTGGACTCAGTGCGTAAGGAGTATGCTTCTATGGCGAGTGGAAGGGATATAGCAATCAACAATGCAGAAGAGACTATTGCAACATCCAAGCAGATTGAAAAGGCAGTTGAAGACTTGACTACTGAGTTGATTGCAACAAAAGAGGAGTTGAACTCCACGCGAACCGCGCATTTGGAAGCAGAAGAACAAAGATTAGGAGTTGTTGATCAAGATTCTCACAATTTAAAGTTGGAACTTGAAGGAGTAGAAAAGGAGCTCCAAAGAGTAAATGAGCAAGTTTTGTCAGCCAGGGTTCTAAAATCTAAATTGGAATCAGCTTCCTCCTTACTGCATGATTTAAAAGCTGAATTAGCAACATATATGGAATCAAAAGTAAATGAGGAATGCTATAAAGAACAAAAAGAGAAACTTAAGGAACTAAAGCTAAACATAGAGAAAACAACTTCTGATGTTAACAGCTTGAGGGCGGCTTCTGTGTCGCTAAAATCGAAACTAGAAAAAGAGAAGTCGATTCTCACTTCCCTTAAGAAAAATGAGGAAAAGGCTTTGGCCGTGGTTGCGAATCTCCAAGATGAACTAGAGAAGTCTAGGTTAGCCACAACTTTCATTCAGATGAAAGAGAATGAAGCAAGAAAGATGATGACTGAGTTGCCAAAGAAAGTTCAGAAAGCAGCACAAGAGGCTGATGAGGCCAAATCACTTGCTAAGGCAGCTCAGGAAGAGATGATTGAAGCCCAAGAAGAGCTTGAACAAGCCAAAGCCCAATCAAGCACATTGGAAAGTAGTTTATTGGCAAAACATAAGGAGATAGAAGCAGCCAAGGTTGTTGAGATGTTGGCCAGAGATGCAATCATAACATTGGAGAAGAGTAAATCAGCTGAAGGCAACAAAAATGACAAGGACTCTTCCTCAATGGTGACACTCACACTAGAAGAATATCATGAGCTTAGCAGGAGAGCCTATAAGGCAGAGGAGCAAGCGAACATGAGGATCGAAGCTGCTAATTCTCAGATTCAGATAGCAAGGGAGTCTGAACTAAGAAGCTTGGAGAAGTTAAAAGAACTGAATGAGGAGTTGTCTGTAAGAAGAGAATCTCTCAGCATTGCAACCGAGAATTTCAAAAAGGCCAATGAAGGAAAGTTAGCTGTAGAACATGAATTAAGAACTTGGAGGGCTGAACAAGAGAAACAAAAGAAGCCTGGTGAATTGAATGATGAACAAACTTCTACTCCAACTAAGCCTGCACATGATTCATCAAGCCCTAAGGGAAAAGTTCCTTCAAATAACATTGAAGTTGGATCAGCCTCAGATAAGAACAAAAAGAAGAAGAAGAAGAAGTCATTATTTCCTTCCAAAGTTGTAATGTTCTTTGCCAAGAAAAAAACGCATCCAACCAAGTGA

Predicted protein sequences of Glyma08g35480

Limit To All Plant Sequences

>Glyma08g35480.1   sequence type=predicted peptide   gene model=Glyma08g35480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESTFKDAVSKFGGRIDWKSRRTQSLVEERNKLAEDFRKEEIAEELENTKKLIEELKNSLEKVEKDELEAKKEVEHVILKIEEMEQDIASEASIEAKAKLEAKKSMLTEALLEFEFVERELDSVRKEYASMASGRDIAINNAEETIATSKQIEKAVEDLTTELIATKEELNSTRTAHLEAEEQRLGVVDQDSHNLKLELEGVEKELQRVNEQVLSARVLKSKLESASSLLHDLKAELATYMESKVNEECYKEQKEKLKELKLNIEKTTSDVNSLRAASVSLKSKLEKEKSILTSLKKNEEKALAVVANLQDELEKSRLATTFIQMKENEARKMMTELPKKVQKAAQEADEAKSLAKAAQEEMIEAQEELEQAKAQSSTLESSLLAKHKEIEAAKVVEMLARDAIITLEKSKSAEGNKNDKDSSSMVTLTLEEYHELSRRAYKAEEQANMRIEAANSQIQIARESELRSLEKLKELNEELSVRRESLSIATENFKKANEGKLAVEHELRTWRAEQEKQKKPGELNDEQTSTPTKPAHDSSSPKGKVPSNNIEVGSASDKNKKKKKKKSLFPSKVVMFFAKKKTHPTK*

>Glyma08g35480.2   sequence type=predicted peptide   gene model=Glyma08g35480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESTFKDAVSKFGGRIDWKSRRTQSLVEERNKLAEDFRKEEIAEELENTKKLIEELKNSLEKVEKDELEAKKEVEHVILKIEEMEQDIASEASIEAKAKLEAKKSMLTEALLEFEFVERELDSVRKEYASMASGRDIAINNAEETIATSKQIEKAVEDLTTELIATKEELNSTRTAHLEAEEQRLGVVDQDSHNLKLELEGVEKELQRVNEQVLSARVLKSKLESASSLLHDLKAELATYMESKVNEECYKEQKEKLKELKLNIEKTTSDVNSLRAASVSLKSKLEKEKSILTSLKKNEEKALAVVANLQDELEKSRLATTFIQMKENEARKMMTELPKKVQKAAQEADEAKSLAKAAQEEMIEAQEELEQAKAQSSTLESSLLAKHKEIEAAKVVEMLARDAIITLEKSKSAEGNKNDKDSSSMVTLTLEEYHELSRRAYKAEEQANMRIEAANSQIQIARESELRSLEKLKELNEELSVRRESLSIATENFKKANEGKLAVEHELRTWRAEQEKQKKPGELNDEQTSTPTKPAHDSSSPKGKVPSNNIEVGSASDKNKKKKKKKSLFPSKVVMFFAKKKTHPTK*

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