Glyma08g34790 - SoyBase

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Report for Sequence Feature Glyma08g34790

Feature Type:	gene_model
Chromosome:	Gm08
Start:	31811581
stop:	31819426
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g34790

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G79620	AT	Annotation by Michelle Graham. TAIR10: Leucine-rich repeat protein kinase family protein \| chr1:29957633-29962174 REVERSE LENGTH=971	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0007169	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway	SoyBase	N/A	ISS
GO:0010413	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process	SoyBase	N/A	ISS
GO:0042546	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall biogenesis	SoyBase	N/A	ISS
GO:0044036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process	SoyBase	N/A	ISS
GO:0045492	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF476	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF07714	PFAM	Protein tyrosine kinase	JGI		ISS
PF08263	PFAM	Leucine rich repeat N-terminal domain	JGI		ISS
UniRef100_C5DB47	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ATP binding / kinase/ protein serine / threonine kinase n=1 Tax=Vitis vinifera RepID=C5DB47_VITVI	SoyBase	E_val: 0	ISS
UniRef100_I1KWY6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KWY6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g34790

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g34790 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g266100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g34790

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g34790

Limit To All Plant Sequences

>Glyma08g34790.1   sequence type=CDS   gene model=Glyma08g34790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAATCCTCTATGTGTTGCTCTTTCTGGGACTCTTGTGGGCTGAAATTCATGTCATTTCTTCATTCACTGATACTCGAGACGTTGTTGCACTTAGATCATTAAAAGATGCATGGCAACATACACCGCCCAGCTGGGACAAATCAGATGACCCGTGTGGAGCACCATGGGAAGGAGTGACCTGCAACAAATCAAGGGTTACTTCATTGGGACTGTCAACCATGGGCCTGAAGGGTAAATTAACTGGAGATATTGGTCAACTTACAGAATTAAGATCCTTGGACTTGTCATTTAATAGAGATTTAACAGGTCCTCTCTCCCCACAGTTAGGAGACCTCAGCAATCTAAATATCTTGATTTTGGCTGGTTGCAGCTTCAGTGGCAATATTCCAGATGACTTAGGAAAACTTTCAGAGCTATCTTTCCTGGCTTTGAATTCAAACAACTTCACTGGAAAAATACCTCCTTCATTGGGTAATCTCTCCAAACTTTATTGGTTGGACTTGGCAGACAATCAGCTGACAGGACCTATCCCAGTTTCAACCTCCAACACCCCTGGATTAGACCTTCTTTTAAAGGCTAAGCACTTCCATTTCAATAAGAACCACCTCTCAGGTTCCATTCCTCCCAAGCTCTTCAGCTCTGAGATGATACTCATACACATATTATTTGATGGAAATAATTTGAGTGGGACTATACCTTCAACACTAGTACTAGTTAAGAGCGTTGAGGTTCTCCGGCTTGATAGGAATTTCCTGACAGGAGAGGTTCCATCAGATATCAACAACCTTACAAACATCAATGAATTGAATTTAGCACATAACAAATTCATAGGTCCTTTGCCTGACTTAACTGGAATGGATACCCTCAACTATGTGGATCTTAGTAACAACTCTTTTGATCCATCTGATGCTCCAACTTGGTTCACAACTCTTCCATCACTCACCACTCTTATTATGGAGTTTGGATCCCTTCAAGGTCCTCTTCCATCGAAACTCTTTGACATTCCTCAAATACAGCAAGTGAAACTACGAAACAATGCATTGAACAATACATTCGACATGGGTGACAACATTTGTCCCCAATTGCAGCTTGTAGATTTGCAAGAAAATGAGATTTCCTCGGTGACATTCCGTGCACAATACAAAAATACATTGATTCTTATAGGAAATCCAGTGTGCAGTGGTAGTGCTCTTTCAAATACAAATTACTGCCAACTTCAGCAACAAGCTAAGCAACCCTATTCCACTAGCTTGGCTAATTGTGGAGGCAAATCTTGTCCTCCTGATCAGAAGCTCAGCCCCCAAAGTTGTGAATGTGCCTATCCATATGTAGGAACATTGTACTTTAGAGGACCCTCATTCAGAGAACTGTCCAGTGTAAATACTTTCCATTCACTTGAAATGAGCCTATGGGTGAAATTGGGTCTAACTCCTGGCTCAGTTTCTTTACAAAACCCCTTCTTCAATAGTGATGATTATCTTCAAGTGCAACTAGCACTCTTTCCACCAATAGGGCAATATTTTAACAGGTCAGAAGTTCAAAGACTTGGGTTTGAATTGAGTAATCAAACTTACAAGCCTCCAAAAGAGTTTGGACCTTACTACTTTATTGCATTTCCTTATCCTTTTCCAGGTTCCCAGAAAGGAGCTTCTCTTAACAAAGGTGTTGTTATTGGGATATCGATTGGCTGCACAGTTCTGGTTCTGAGCCTCATAGGGTTAGCTATATATGCAATTCTGCAAAAGAAGCGTGCAGAGAGAGCCATTGGATTAAGTAGACCATTTGCATCATGGGCACCAAGTGGCAAGGATAGTGGAGGTGCACCACAATTAAAGGGAGCAAGATGGTTCTCTTATGATGAGCTCAAAAAGTGCTCCAACAATTTCTCTGAAAGCAATGAGATAGGCTTTGGTGGCTATGGCAAGGTGTACAAAGGGGTTTTCCCTGATGGGAAAATAGTTGCAATCAAACGAGCTCAGCAAGGATCGATGCAAGGAGGCGTAGAGTTCAAGACTGAAATTGAGTTGCTTTCAAGAGTTCACCACAAGAATCTTGTTGGTCTCGTTGGATTCTGTTTTGAACAAGGGGAACAAATGTTGATTTACGAATTTATGCCCAATGGAACACTTAGGGAGAGTTTGTCAGGGAGATCTGAGATTCATCTTGACTGGAAGAGGAGACTCCGCATTGCTCTTGGTTCCGCCAGAGGACTTGCATACTTACATGAGCTTGCCAACCCTCCCATAATCCACAGAGACGTGAAGTCGACTAATATATTGTTGGATGAAAATTTGACAGCAAAGGTTGCAGATTTTGGCTTGTCCAAGCTTGTATCAGACAGTGAGAAAGGACATGTTTCAACTCAGGTTAAAGGGACATTGGGTTATCTGGATCCAGAGTATTATATGACCCAACAACTCACTGAGAAGAGTGATGTGTACAGTTTTGGAGTAGTCATGCTTGAACTAATAACTTCAAGGCAACCAATTGAGAAGGGCAAGTACATTGTCCGCGAGGTGCGCATGCTGATGAATAAGAAGGATGATGAAGAACACAATGGTTTGAGGGAACTCATGGATCCAGTGGTAAGAAACACACCAAACCTCGTAGGATTTGGGAGGTTCTTAGAGTTGGCAATGCAATGTGTTGGGGAATCAGCTGCAGACCGTCCAACAATGAGTGAAGTTGTGAAAGCACTTGAAACCATTTTGCAGAATGATGGTATGAACACAAACTCTACCTCTGCATCCTCTTCTGCCACTGACTTTGGAGTTGGTAAGGGTGGAATGAGGCATCCCTACATTGATGGTACTTTCACTAAGAAGGACAATGTCAATGATAGTAGTAGTAGTGCGTTTGACTACAGTGGGGGGTACACACTTTCAACAAAAGTTGAACCCAAATAG

Predicted protein sequences of Glyma08g34790

Limit To All Plant Sequences

>Glyma08g34790.1   sequence type=predicted peptide   gene model=Glyma08g34790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTILYVLLFLGLLWAEIHVISSFTDTRDVVALRSLKDAWQHTPPSWDKSDDPCGAPWEGVTCNKSRVTSLGLSTMGLKGKLTGDIGQLTELRSLDLSFNRDLTGPLSPQLGDLSNLNILILAGCSFSGNIPDDLGKLSELSFLALNSNNFTGKIPPSLGNLSKLYWLDLADNQLTGPIPVSTSNTPGLDLLLKAKHFHFNKNHLSGSIPPKLFSSEMILIHILFDGNNLSGTIPSTLVLVKSVEVLRLDRNFLTGEVPSDINNLTNINELNLAHNKFIGPLPDLTGMDTLNYVDLSNNSFDPSDAPTWFTTLPSLTTLIMEFGSLQGPLPSKLFDIPQIQQVKLRNNALNNTFDMGDNICPQLQLVDLQENEISSVTFRAQYKNTLILIGNPVCSGSALSNTNYCQLQQQAKQPYSTSLANCGGKSCPPDQKLSPQSCECAYPYVGTLYFRGPSFRELSSVNTFHSLEMSLWVKLGLTPGSVSLQNPFFNSDDYLQVQLALFPPIGQYFNRSEVQRLGFELSNQTYKPPKEFGPYYFIAFPYPFPGSQKGASLNKGVVIGISIGCTVLVLSLIGLAIYAILQKKRAERAIGLSRPFASWAPSGKDSGGAPQLKGARWFSYDELKKCSNNFSESNEIGFGGYGKVYKGVFPDGKIVAIKRAQQGSMQGGVEFKTEIELLSRVHHKNLVGLVGFCFEQGEQMLIYEFMPNGTLRESLSGRSEIHLDWKRRLRIALGSARGLAYLHELANPPIIHRDVKSTNILLDENLTAKVADFGLSKLVSDSEKGHVSTQVKGTLGYLDPEYYMTQQLTEKSDVYSFGVVMLELITSRQPIEKGKYIVREVRMLMNKKDDEEHNGLRELMDPVVRNTPNLVGFGRFLELAMQCVGESAADRPTMSEVVKALETILQNDGMNTNSTSASSSATDFGVGKGGMRHPYIDGTFTKKDNVNDSSSSAFDYSGGYTLSTKVEPK*

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