SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G47860 | AT | Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1350) | chr5:19381656-19384310 FORWARD LENGTH=431 | SoyBase | E_val: 0 | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| PF07082 | PFAM | Protein of unknown function (DUF1350) | JGI | ISS | |
| UniRef100_I1KWX4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KWX4_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9FIJ5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: AT5g47860/MCA23_20 n=1 Tax=Arabidopsis thaliana RepID=Q9FIJ5_ARATH | SoyBase | E_val: 0 | ISS |
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Glyma08g34050 not represented in the dataset |
Glyma08g34050 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g265400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g34050.2 sequence type=transcript gene model=Glyma08g34050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGTCTATTAATCGGGTGACACAGAGTTCACAATAAGATGGTTCAATGGTTCATTCAGACATTCATCATTGACCAATCAACACCAACTCCAAACAGTTGGAATCGACGAAACGCAAAGGCATATTGACATTGGCATGGCTACCTCGCTGTGTACACCCAGCTACAGAGTCACACTGAAACTGTACGGAACAGATTCCCATAAGTTAAACGCAAAGCCCTCAGTTCGTTATAGGCGTCGTTTTGGCACCACCACCAGAATATGCTGCACCTCTAATAATTACAACGACAACAACATCCAACGACGACCCCAATCCGAAGCTATTCAAGTTTACTCGCAAATCGAGAGATTACTTACAGATTCTGTTAGACAATCACAGGATGGTTGGTGGGGTTCCCCAGACTGGAGTGAAGTTGAGGGAGCTTGGATTCTCAAACCGAAAAGCTCTGAACCCAATTATGTAGTGCATTTTATCGGAGGTATATTTGTTGGAGCTGCTCCTCAGCTTACCTACCGGAGGTTTCTTGAGCGTCTCTCAGAAAAGGGTATATTGATCATTGCAACGCCATATGCTAGTGGGTTTGATCACTTCCTCATTGCTGATGAAGTACAGTTCAAATTTGATAGGTGCTATCGCACACTGCAAGAAACAATCCAAGACCTTCCTATTTTTGGTGTTGGCCATTCTTTGGGGTCGGTGGTCCACCTTCTGATTGGATCAAGATATGCAGTGCAAAGATCTGGAAATGTTCTCATGGCATTCAATAACAAGGAAGCAAGTTCAGCTGTTCCTTTGTTCTCTCCTGTGATCGTCCCAATGGCTCAAACCATTGGTCCACTTCTATCAGATATTTTTTCTTCACCAACTCTAAGAGCTGGGGCAGAGATGACTTTGAAGCAACTAGAAAACGTTAGCCCTCCAATTATGAAGCAGGTTCTTCCTTTAGTTGAGCAGCTCCCTCCCTTGTACATGGATTTGGTCAAGGGAAGAGAAGATTTTTCTCCAAAGCCTGAGGAGACACGTCGACTTGTGCTTAGTTCAGAATCAGCCATTAGCTCAGTGCTAGACATGTCAATACGAAAGTTGCCTGGAGATCACGGTCTTCCATTGCAACAGGCCCTACCAAATGTTCCGCCAGCAATGGCCGATGCAGTTAATCGTGGAAGTGAGCTTTTGTCAAATCTTACTGTTGGAACACCGTGGGAGATAGTTGCGAAAGAAGTAGGAAACTCGCTAGGCATGGATTCTGGAGTCCTGCGCGCTGAAGTTTCAAAGGACATGGATATGCTTGTCGATGTCATCGCAGCCTGGATAGCCTCCAATGCAGGGCCTAAACTTCTTCGGCCCTAAGGTCACGGTTTCATCTGGTCCTTGTCAGTTAAAGAACACATGCTGTAGAAATGTATAATAAATCAATATTGGCACCGACACTTCTTTCATCCTATCTCGGAGAATGCCAATCATGTGAATCCATACAAGTAAAGAAAATAGAACTCTGACAATCACCTGATGCTGTAAAAATATGAATTACATTGTTACAAAAAAAAAAAAAATAGTTGTTATATAGAAATTATTCGTTCCTCAGTGTACTGCCGTTCAGAATAGCTGTTCCTCTAATTTTAAAGGCACAAGAGGGTGTTTTTAACCTTGAGTTGATTTGATATTCTTTTAGAAGCATAGGTTACACCCGAATGGGCCTTGTGGGTGGTGGC
>Glyma08g34050.1 sequence type=CDS gene model=Glyma08g34050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTACCTCGCTGTGTACACCCAGCTACAGAGTCACACTGAAACTGTACGGAACAGATTCCCATAAGTTAAACGCAAAGCCCTCAGTTCGTTATAGGCGTCGTTTTGGCACCACCACCAGAATATGCTGCACCTCTAATAATTACAACGACAACAACATCCAACGACGACCCCAATCCGAAGCTATTCAAGTTTACTCGCAAATCGAGAGATTACTTACAGATTCTGTTAGACAATCACAGGATGGTTGGTGGGGTTCCCCAGACTGGAGTGAAGTTGAGGGAGCTTGGATTCTCAAACCGAAAAGCTCTGAACCCAATTATGTAGTGCATTTTATCGGAGGTATATTTGTTGGAGCTGCTCCTCAGCTTACCTACCGGAGGTTTCTTGAGCGTCTCTCAGAAAAGGGTATATTGATCATTGCAACGCCATATGCTAGTGGGTTTGATCACTTCCTCATTGCTGATGAAGTACAGTTCAAATTTGATAGGTGCTATCGCACACTGCAAGAAACAATCCAAGACCTTCCTATTTTTGGTGTTGGCCATTCTTTGGGGTCGGTGGTCCACCTTCTGATTGGATCAAGATATGCAGTGCAAAGATCTGGAAATGTTCTCATGGCATTCAATAACAAGGAAGCAAGTTCAGCTGTTCCTTTGTTCTCTCCTGTGATCGTCCCAATGGCTCAAACCATTGGTCCACTTCTATCAGATATTTTTTCTTCACCAACTCTAAGAGCTGGGGCAGAGATGACTTTGAAGCAACTAGAAAACGTTAGCCCTCCAATTATGAAGCAGGTTCTTCCTTTAGTTGAGCAGCTCCCTCCCTTGTACATGGATTTGGTCAAGGGAAGAGAAGATTTTTCTCCAAAGCCTGAGGAGACACGTCGACTTATAAAATCATACTATGGCATATCCAGAAATCTTCTGATAAAATTCCAGGATGATTTAATAGATGAGACTTCAACTCTAGCGCAGGTGCTTAGTTCAGAATCAGCCATTAGCTCAGTGCTAGACATGTCAATACGAAAGTTGCCTGGAGATCACGGTCTTCCATTGCAACAGGCCCTACCAAATGTTCCGCCAGCAATGGCCGATGCAGTTAATCGTGGAAGTGAGCTTTTGTCAAATCTTACTGTTGGAACACCGTGGGAGATAGTTGCGAAAGAAGTAGGAAACTCGCTAGGCATGGATTCTGGAGTCCTGCGCGCTGAAGTTTCAAAGGACATGGATATGCTTGTCGATGTCATCGCAGCCTGGATAGCCTCCAATGCAGGGCCTAAACTTCTTCGGCCCTAA >Glyma08g34050.2 sequence type=CDS gene model=Glyma08g34050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTACCTCGCTGTGTACACCCAGCTACAGAGTCACACTGAAACTGTACGGAACAGATTCCCATAAGTTAAACGCAAAGCCCTCAGTTCGTTATAGGCGTCGTTTTGGCACCACCACCAGAATATGCTGCACCTCTAATAATTACAACGACAACAACATCCAACGACGACCCCAATCCGAAGCTATTCAAGTTTACTCGCAAATCGAGAGATTACTTACAGATTCTGTTAGACAATCACAGGATGGTTGGTGGGGTTCCCCAGACTGGAGTGAAGTTGAGGGAGCTTGGATTCTCAAACCGAAAAGCTCTGAACCCAATTATGTAGTGCATTTTATCGGAGGTATATTTGTTGGAGCTGCTCCTCAGCTTACCTACCGGAGGTTTCTTGAGCGTCTCTCAGAAAAGGGTATATTGATCATTGCAACGCCATATGCTAGTGGGTTTGATCACTTCCTCATTGCTGATGAAGTACAGTTCAAATTTGATAGGTGCTATCGCACACTGCAAGAAACAATCCAAGACCTTCCTATTTTTGGTGTTGGCCATTCTTTGGGGTCGGTGGTCCACCTTCTGATTGGATCAAGATATGCAGTGCAAAGATCTGGAAATGTTCTCATGGCATTCAATAACAAGGAAGCAAGTTCAGCTGTTCCTTTGTTCTCTCCTGTGATCGTCCCAATGGCTCAAACCATTGGTCCACTTCTATCAGATATTTTTTCTTCACCAACTCTAAGAGCTGGGGCAGAGATGACTTTGAAGCAACTAGAAAACGTTAGCCCTCCAATTATGAAGCAGGTTCTTCCTTTAGTTGAGCAGCTCCCTCCCTTGTACATGGATTTGGTCAAGGGAAGAGAAGATTTTTCTCCAAAGCCTGAGGAGACACGTCGACTTGTGCTTAGTTCAGAATCAGCCATTAGCTCAGTGCTAGACATGTCAATACGAAAGTTGCCTGGAGATCACGGTCTTCCATTGCAACAGGCCCTACCAAATGTTCCGCCAGCAATGGCCGATGCAGTTAATCGTGGAAGTGAGCTTTTGTCAAATCTTACTGTTGGAACACCGTGGGAGATAGTTGCGAAAGAAGTAGGAAACTCGCTAGGCATGGATTCTGGAGTCCTGCGCGCTGAAGTTTCAAAGGACATGGATATGCTTGTCGATGTCATCGCAGCCTGGATAGCCTCCAATGCAGGGCCTAAACTTCTTCGGCCCTAA
>Glyma08g34050.1 sequence type=predicted peptide gene model=Glyma08g34050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATSLCTPSYRVTLKLYGTDSHKLNAKPSVRYRRRFGTTTRICCTSNNYNDNNIQRRPQSEAIQVYSQIERLLTDSVRQSQDGWWGSPDWSEVEGAWILKPKSSEPNYVVHFIGGIFVGAAPQLTYRRFLERLSEKGILIIATPYASGFDHFLIADEVQFKFDRCYRTLQETIQDLPIFGVGHSLGSVVHLLIGSRYAVQRSGNVLMAFNNKEASSAVPLFSPVIVPMAQTIGPLLSDIFSSPTLRAGAEMTLKQLENVSPPIMKQVLPLVEQLPPLYMDLVKGREDFSPKPEETRRLIKSYYGISRNLLIKFQDDLIDETSTLAQVLSSESAISSVLDMSIRKLPGDHGLPLQQALPNVPPAMADAVNRGSELLSNLTVGTPWEIVAKEVGNSLGMDSGVLRAEVSKDMDMLVDVIAAWIASNAGPKLLRP* >Glyma08g34050.2 sequence type=predicted peptide gene model=Glyma08g34050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATSLCTPSYRVTLKLYGTDSHKLNAKPSVRYRRRFGTTTRICCTSNNYNDNNIQRRPQSEAIQVYSQIERLLTDSVRQSQDGWWGSPDWSEVEGAWILKPKSSEPNYVVHFIGGIFVGAAPQLTYRRFLERLSEKGILIIATPYASGFDHFLIADEVQFKFDRCYRTLQETIQDLPIFGVGHSLGSVVHLLIGSRYAVQRSGNVLMAFNNKEASSAVPLFSPVIVPMAQTIGPLLSDIFSSPTLRAGAEMTLKQLENVSPPIMKQVLPLVEQLPPLYMDLVKGREDFSPKPEETRRLVLSSESAISSVLDMSIRKLPGDHGLPLQQALPNVPPAMADAVNRGSELLSNLTVGTPWEIVAKEVGNSLGMDSGVLRAEVSKDMDMLVDVIAAWIASNAGPKLLRP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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