Glyma08g33830 - SoyBase

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Report for Sequence Feature Glyma08g33830

Feature Type:	gene_model
Chromosome:	Gm08
Start:	30471214
stop:	30475143
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g33830

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G26470	AT	Annotation by Michelle Graham. TAIR10: Calcium-binding EF-hand family protein \| chr4:13371377-13372343 FORWARD LENGTH=231	SoyBase	E_val: 6.00E-119	ISS
GO:0000041	GO-bp	Annotation by Michelle Graham. GO Biological Process: transition metal ion transport	SoyBase	N/A	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0009693	GO-bp	Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process	SoyBase	N/A	ISS
GO:0009827	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification	SoyBase	N/A	ISS
GO:0009860	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube growth	SoyBase	N/A	ISS
GO:0010359	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of anion channel activity	SoyBase	N/A	ISS
GO:0010583	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
KOG0027	KOG	Calmodulin and related proteins (EF-Hand superfamily)	JGI		ISS
PTHR10891	Panther	CALMODULIN	JGI		ISS
PTHR10891:SF8	Panther	CALCINEURIN B	JGI		ISS
UniRef100_B9T3W8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Troponin C, skeletal muscle, putative n=1 Tax=Ricinus communis RepID=B9T3W8_RICCO	SoyBase	E_val: 2.00E-133	ISS
UniRef100_I1KWX1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KWX1_SOYBN	SoyBase	E_val: 6.00E-165	ISS

Expression Patterns of Glyma08g33830

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g33830 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g265200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g33830

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g33830

Limit To All Plant Sequences

>Glyma08g33830.3   sequence type=transcript   gene model=Glyma08g33830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGAGTCAGAGAGACGACAACACGTGGTGGGAGCAGCACAAACGTAGGCTGTGACACAAGGCCCAGACTCAGTTAACAAACAAACAAACCTCACTTTCCTAATCTTAAGTTTGGTATTCATCTGTGTCAATGTTCATGCATCTTTCTTCCTCCCAGAAACCACTTTTTTCTTTCTTTTTTGTTCTTTTTTCATTTCAGGTTGTTCACCAGTTTGAGTTGTTGGATCTCCTCCACTGCTTCTTCTCCTGATCCTGTTCTGTTTCAAATTTCAACCCAAGGAGCTTGGGAACAAACTCCTGCTCCTTCTTCTCCTTGGTCATAGGCAATGGGAGGTGCACTGGGAAAGAGTGAATCACCTAGAAAGGGATCGATGCCAGAAACTAAGCTCGAGGCTAAAATGGTTGAAGCAATGCAGCGGAGGGAATCTCAAGGAAGTTCCGTGAAATCATTCAACACTATAATCTTGAAATTCCCAAAGATTGATGAGAGCCTTAGAAAATGCAAAGCCATATTTGAGCAGTTTGATGAGGATTCTAATGGGGCAATAGATCAAGAGGAGTTGAAAAAGTGTTTCAGTAAGCTGGAAATTTCTTTTTCCGAGGAGGAAATAAATGATCTTTTTGAAGCATGTGATATTAACGAGGATATGGGAATGAAGTTCAATGAGTTTATTGTACTTCTTTGTGTTGTCTACCTTCTCAAGAATGACCCTGCAGCTCTTCATGCTAAATCACGAATTGGGATGCCAAAGCTGGAGGGCACATTTGAGACTTTGGTTGATACATTTGTATTCTTAGACAAGAACAAGGATGGATATGTCAGCAAAAATGAGATGGTCCAAGCTATAAACGAAACTACATCAGGGGAGCGTTCTTCTGGAAGAATAGCCATGAAAAGATTTGAAGAAATGGATTGGGATAAAAATGGAATGGTTAACTTCAAGGAGTTTCTATTTGCTTTTACACGTTGGGTTGGAATTGATGAAGTTGACGATGAGGAAAATGACGAGGCTTAAATCATTTCATCTAAATATCTGACTGCCTCTTCAGCCAAGGCAAAAGGGTTTTTCTGGTTTTCCCTTGCAATAAAGGCCAAGTTGCTGCACGTTGAATTTTAAAGAAACTGTCATTCCTGAAGTTCGTTATGTAAATAGTAAGTGTAGAGCTAAGTGCCGTATTGAAGAAATGTTCAAATTTACGGATTAAATGCTACTACCATAGTGATTATGTATCGGTTGCTGCTTCTTTCTCTTTCTCGCTTAGTATTCAATTCTGCTATGTATTGAACTATAAATAGCCTGTGCTAGTGCACTACAATAATGAGAGGCAAACTGGCAAAGTGCATATCTACTCATTAAGTAGTTTAGCCCTTCCTAAAGAGCATATATATCTACATGTGATGAAATGGGTTAAACTAGCTAGCAAGTAGCAAGAGGCAAGAATCTTGCACGCATGAGATCAGGCCATGTGGACTTGATGTAGTGTAAATTGTCTGATTTTTGGCAATTGCTTCGTGCTTCCAATATAATTGCTTGTGCACCCATCAATTTAAGTGAAGTGATAAAAATGTTCTTCACTTAAAAATTTAAAAGCTCCCTCTTCTATTCTCCCTCCC

Coding sequences of Glyma08g33830

Limit To All Plant Sequences

>Glyma08g33830.2   sequence type=CDS   gene model=Glyma08g33830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGGTGCACTGGGAAAGAGTGAATCACCTAGAAAGGGATCGATGCCAGAAACTAAGCTCGAGGCTAAAATGGTTGAAGCAATGCAGCGGAGGGAATCTCAAGGAAGTTCCGTGAAATCATTCAACACTATAATCTTGAAATTCCCAAAGATTGATGAGAGCCTTAGAAAATGCAAAGCCATATTTGAGCAGTTTGATGAGGATTCTAATGGGGCAATAGATCAAGAGGAGTTGAAAAAGTGTTTCAGTAAGCTGGAAATTTCTTTTTCCGAGGAGGAAATAAATGATCTTTTTGAAGCATGTGATATTAACGAGGATATGGGAATGAAGTTCAATGAGTTTATTGTACTTCTTTGTGTTGTCTACCTTCTCAAGAATGACCCTGCAGCTCTTCATGCTAAATCACGAATTGGGATGCCAAAGCTGGAGGGCACATTTGAGACTTTGGTTGATACATTTGTATTCTTAGACAAGAACAAGGATGGATATGTCAGCAAAAATGAGATGGTCCAAGCTATAAACGAAACTACATCAGGGGAGCGTTCTTCTGGAAGAATAGCCATGAAAAGATTTGAAGAAATGGATTGGGATAAAAATGGAATGGTTAACTTCAAGGAGTTTCTATTTGCTTTTACACGTTGGGTTGGAATTGATGAAGTTGACGATGAGGAAAATGACGAGGCTTAA

>Glyma08g33830.3   sequence type=CDS   gene model=Glyma08g33830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGGTGCACTGGGAAAGAGTGAATCACCTAGAAAGGGATCGATGCCAGAAACTAAGCTCGAGGCTAAAATGGTTGAAGCAATGCAGCGGAGGGAATCTCAAGGAAGTTCCGTGAAATCATTCAACACTATAATCTTGAAATTCCCAAAGATTGATGAGAGCCTTAGAAAATGCAAAGCCATATTTGAGCAGTTTGATGAGGATTCTAATGGGGCAATAGATCAAGAGGAGTTGAAAAAGTGTTTCAGTAAGCTGGAAATTTCTTTTTCCGAGGAGGAAATAAATGATCTTTTTGAAGCATGTGATATTAACGAGGATATGGGAATGAAGTTCAATGAGTTTATTGTACTTCTTTGTGTTGTCTACCTTCTCAAGAATGACCCTGCAGCTCTTCATGCTAAATCACGAATTGGGATGCCAAAGCTGGAGGGCACATTTGAGACTTTGGTTGATACATTTGTATTCTTAGACAAGAACAAGGATGGATATGTCAGCAAAAATGAGATGGTCCAAGCTATAAACGAAACTACATCAGGGGAGCGTTCTTCTGGAAGAATAGCCATGAAAAGATTTGAAGAAATGGATTGGGATAAAAATGGAATGGTTAACTTCAAGGAGTTTCTATTTGCTTTTACACGTTGGGTTGGAATTGATGAAGTTGACGATGAGGAAAATGACGAGGCTTAA

Predicted protein sequences of Glyma08g33830

Limit To All Plant Sequences

>Glyma08g33830.2   sequence type=predicted peptide   gene model=Glyma08g33830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGALGKSESPRKGSMPETKLEAKMVEAMQRRESQGSSVKSFNTIILKFPKIDESLRKCKAIFEQFDEDSNGAIDQEELKKCFSKLEISFSEEEINDLFEACDINEDMGMKFNEFIVLLCVVYLLKNDPAALHAKSRIGMPKLEGTFETLVDTFVFLDKNKDGYVSKNEMVQAINETTSGERSSGRIAMKRFEEMDWDKNGMVNFKEFLFAFTRWVGIDEVDDEENDEA*

>Glyma08g33830.3   sequence type=predicted peptide   gene model=Glyma08g33830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGALGKSESPRKGSMPETKLEAKMVEAMQRRESQGSSVKSFNTIILKFPKIDESLRKCKAIFEQFDEDSNGAIDQEELKKCFSKLEISFSEEEINDLFEACDINEDMGMKFNEFIVLLCVVYLLKNDPAALHAKSRIGMPKLEGTFETLVDTFVFLDKNKDGYVSKNEMVQAINETTSGERSSGRIAMKRFEEMDWDKNGMVNFKEFLFAFTRWVGIDEVDDEENDEA*

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