SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G26470 | AT | Annotation by Michelle Graham. TAIR10: Calcium-binding EF-hand family protein | chr4:13371377-13372343 FORWARD LENGTH=231 | SoyBase | E_val: 6.00E-119 | ISS |
| GO:0000041 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transition metal ion transport | SoyBase | N/A | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
| GO:0009407 | GO-bp | Annotation by Michelle Graham. GO Biological Process: toxin catabolic process | SoyBase | N/A | ISS |
| GO:0009693 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process | SoyBase | N/A | ISS |
| GO:0009827 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification | SoyBase | N/A | ISS |
| GO:0009860 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen tube growth | SoyBase | N/A | ISS |
| GO:0010359 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of anion channel activity | SoyBase | N/A | ISS |
| GO:0010583 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005509 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calcium ion binding | SoyBase | N/A | ISS |
| KOG0027 | KOG | Calmodulin and related proteins (EF-Hand superfamily) | JGI | ISS | |
| PTHR10891 | Panther | CALMODULIN | JGI | ISS | |
| PTHR10891:SF8 | Panther | CALCINEURIN B | JGI | ISS | |
| UniRef100_B9T3W8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Troponin C, skeletal muscle, putative n=1 Tax=Ricinus communis RepID=B9T3W8_RICCO | SoyBase | E_val: 2.00E-133 | ISS |
| UniRef100_I1KWX1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KWX1_SOYBN | SoyBase | E_val: 6.00E-165 | ISS |
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Glyma08g33830 not represented in the dataset |
Glyma08g33830 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g265200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g33830.3 sequence type=transcript gene model=Glyma08g33830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAGAGTCAGAGAGACGACAACACGTGGTGGGAGCAGCACAAACGTAGGCTGTGACACAAGGCCCAGACTCAGTTAACAAACAAACAAACCTCACTTTCCTAATCTTAAGTTTGGTATTCATCTGTGTCAATGTTCATGCATCTTTCTTCCTCCCAGAAACCACTTTTTTCTTTCTTTTTTGTTCTTTTTTCATTTCAGGTTGTTCACCAGTTTGAGTTGTTGGATCTCCTCCACTGCTTCTTCTCCTGATCCTGTTCTGTTTCAAATTTCAACCCAAGGAGCTTGGGAACAAACTCCTGCTCCTTCTTCTCCTTGGTCATAGGCAATGGGAGGTGCACTGGGAAAGAGTGAATCACCTAGAAAGGGATCGATGCCAGAAACTAAGCTCGAGGCTAAAATGGTTGAAGCAATGCAGCGGAGGGAATCTCAAGGAAGTTCCGTGAAATCATTCAACACTATAATCTTGAAATTCCCAAAGATTGATGAGAGCCTTAGAAAATGCAAAGCCATATTTGAGCAGTTTGATGAGGATTCTAATGGGGCAATAGATCAAGAGGAGTTGAAAAAGTGTTTCAGTAAGCTGGAAATTTCTTTTTCCGAGGAGGAAATAAATGATCTTTTTGAAGCATGTGATATTAACGAGGATATGGGAATGAAGTTCAATGAGTTTATTGTACTTCTTTGTGTTGTCTACCTTCTCAAGAATGACCCTGCAGCTCTTCATGCTAAATCACGAATTGGGATGCCAAAGCTGGAGGGCACATTTGAGACTTTGGTTGATACATTTGTATTCTTAGACAAGAACAAGGATGGATATGTCAGCAAAAATGAGATGGTCCAAGCTATAAACGAAACTACATCAGGGGAGCGTTCTTCTGGAAGAATAGCCATGAAAAGATTTGAAGAAATGGATTGGGATAAAAATGGAATGGTTAACTTCAAGGAGTTTCTATTTGCTTTTACACGTTGGGTTGGAATTGATGAAGTTGACGATGAGGAAAATGACGAGGCTTAAATCATTTCATCTAAATATCTGACTGCCTCTTCAGCCAAGGCAAAAGGGTTTTTCTGGTTTTCCCTTGCAATAAAGGCCAAGTTGCTGCACGTTGAATTTTAAAGAAACTGTCATTCCTGAAGTTCGTTATGTAAATAGTAAGTGTAGAGCTAAGTGCCGTATTGAAGAAATGTTCAAATTTACGGATTAAATGCTACTACCATAGTGATTATGTATCGGTTGCTGCTTCTTTCTCTTTCTCGCTTAGTATTCAATTCTGCTATGTATTGAACTATAAATAGCCTGTGCTAGTGCACTACAATAATGAGAGGCAAACTGGCAAAGTGCATATCTACTCATTAAGTAGTTTAGCCCTTCCTAAAGAGCATATATATCTACATGTGATGAAATGGGTTAAACTAGCTAGCAAGTAGCAAGAGGCAAGAATCTTGCACGCATGAGATCAGGCCATGTGGACTTGATGTAGTGTAAATTGTCTGATTTTTGGCAATTGCTTCGTGCTTCCAATATAATTGCTTGTGCACCCATCAATTTAAGTGAAGTGATAAAAATGTTCTTCACTTAAAAATTTAAAAGCTCCCTCTTCTATTCTCCCTCCC
>Glyma08g33830.2 sequence type=CDS gene model=Glyma08g33830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAGGTGCACTGGGAAAGAGTGAATCACCTAGAAAGGGATCGATGCCAGAAACTAAGCTCGAGGCTAAAATGGTTGAAGCAATGCAGCGGAGGGAATCTCAAGGAAGTTCCGTGAAATCATTCAACACTATAATCTTGAAATTCCCAAAGATTGATGAGAGCCTTAGAAAATGCAAAGCCATATTTGAGCAGTTTGATGAGGATTCTAATGGGGCAATAGATCAAGAGGAGTTGAAAAAGTGTTTCAGTAAGCTGGAAATTTCTTTTTCCGAGGAGGAAATAAATGATCTTTTTGAAGCATGTGATATTAACGAGGATATGGGAATGAAGTTCAATGAGTTTATTGTACTTCTTTGTGTTGTCTACCTTCTCAAGAATGACCCTGCAGCTCTTCATGCTAAATCACGAATTGGGATGCCAAAGCTGGAGGGCACATTTGAGACTTTGGTTGATACATTTGTATTCTTAGACAAGAACAAGGATGGATATGTCAGCAAAAATGAGATGGTCCAAGCTATAAACGAAACTACATCAGGGGAGCGTTCTTCTGGAAGAATAGCCATGAAAAGATTTGAAGAAATGGATTGGGATAAAAATGGAATGGTTAACTTCAAGGAGTTTCTATTTGCTTTTACACGTTGGGTTGGAATTGATGAAGTTGACGATGAGGAAAATGACGAGGCTTAA >Glyma08g33830.3 sequence type=CDS gene model=Glyma08g33830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAGGTGCACTGGGAAAGAGTGAATCACCTAGAAAGGGATCGATGCCAGAAACTAAGCTCGAGGCTAAAATGGTTGAAGCAATGCAGCGGAGGGAATCTCAAGGAAGTTCCGTGAAATCATTCAACACTATAATCTTGAAATTCCCAAAGATTGATGAGAGCCTTAGAAAATGCAAAGCCATATTTGAGCAGTTTGATGAGGATTCTAATGGGGCAATAGATCAAGAGGAGTTGAAAAAGTGTTTCAGTAAGCTGGAAATTTCTTTTTCCGAGGAGGAAATAAATGATCTTTTTGAAGCATGTGATATTAACGAGGATATGGGAATGAAGTTCAATGAGTTTATTGTACTTCTTTGTGTTGTCTACCTTCTCAAGAATGACCCTGCAGCTCTTCATGCTAAATCACGAATTGGGATGCCAAAGCTGGAGGGCACATTTGAGACTTTGGTTGATACATTTGTATTCTTAGACAAGAACAAGGATGGATATGTCAGCAAAAATGAGATGGTCCAAGCTATAAACGAAACTACATCAGGGGAGCGTTCTTCTGGAAGAATAGCCATGAAAAGATTTGAAGAAATGGATTGGGATAAAAATGGAATGGTTAACTTCAAGGAGTTTCTATTTGCTTTTACACGTTGGGTTGGAATTGATGAAGTTGACGATGAGGAAAATGACGAGGCTTAA
>Glyma08g33830.2 sequence type=predicted peptide gene model=Glyma08g33830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGGALGKSESPRKGSMPETKLEAKMVEAMQRRESQGSSVKSFNTIILKFPKIDESLRKCKAIFEQFDEDSNGAIDQEELKKCFSKLEISFSEEEINDLFEACDINEDMGMKFNEFIVLLCVVYLLKNDPAALHAKSRIGMPKLEGTFETLVDTFVFLDKNKDGYVSKNEMVQAINETTSGERSSGRIAMKRFEEMDWDKNGMVNFKEFLFAFTRWVGIDEVDDEENDEA* >Glyma08g33830.3 sequence type=predicted peptide gene model=Glyma08g33830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGGALGKSESPRKGSMPETKLEAKMVEAMQRRESQGSSVKSFNTIILKFPKIDESLRKCKAIFEQFDEDSNGAIDQEELKKCFSKLEISFSEEEINDLFEACDINEDMGMKFNEFIVLLCVVYLLKNDPAALHAKSRIGMPKLEGTFETLVDTFVFLDKNKDGYVSKNEMVQAINETTSGERSSGRIAMKRFEEMDWDKNGMVNFKEFLFAFTRWVGIDEVDDEENDEA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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