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Report for Sequence Feature Glyma08g33600

Feature Type:gene_model
Chromosome:Gm08
Start:30282964
stop:30285570
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g33600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G09880AT Annotation by Michelle Graham. TAIR10: Splicing factor, CC1-like | chr5:3081646-3085179 REVERSE LENGTH=527 SoyBaseE_val: 1.00E-32ISS
GO:0006397GO-bp Annotation by Michelle Graham. GO Biological Process: mRNA processing SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
PTHR24012Panther FAMILY NOT NAMED JGI ISS
PTHR24012:SF293Panther JGI ISS
UniRef100_G7LC87UniRef Annotation by Michelle Graham. Most informative UniRef hit: RNA-binding protein n=3 Tax=Medicago truncatula RepID=G7LC87_MEDTR SoyBaseE_val: 4.00E-39ISS
UniRef100_I1KTD7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KTD7_SOYBN SoyBaseE_val: 3.00E-42ISS

Expression Patterns of Glyma08g33600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g33600 not represented in the dataset
Glyma08g33600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g33600 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma08g33600
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g33600
>Glyma08g33600.1   sequence type=CDS   gene model=Glyma08g33600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGCTAAAAGCAACAGAGAGAGATGTGTATGAGTTCTTTTCAAAAGCTGGCAAGATTATTATTGGAGTTGGTTCTGAAAACTTGATGCAAGTTCTTGATGAGGATGCAGTGCCAATGGCTATTGCTCTCTCTGGCCCACTTCTTCTTGGACAACCTATAATGGTGAAACCTTCTGAAGCTGAAAAGAACCTTGTTCAATCTAATGCTTCTGGTGGAGCAGCCAGTGTAACTGGCCCCTATGGAGCTGTGGACCGAAAATTGTATGTGGGGAATCTTCACTTCAACATGATTGAG
Predicted protein sequences of Glyma08g33600
>Glyma08g33600.1   sequence type=predicted peptide   gene model=Glyma08g33600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPLKATERDVYEFFSKAGKIIIGVGSENLMQVLDEDAVPMAIALSGPLLLGQPIMVKPSEAEKNLVQSNASGGAASVTGPYGAVDRKLYVGNLHFNMIE






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