Glyma08g33510 - SoyBase

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Report for Sequence Feature Glyma08g33510

Feature Type:	gene_model
Chromosome:	Gm08
Start:	30026392
stop:	30033533
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g33510

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G30820	AT	Annotation by Michelle Graham. TAIR10: CTP synthase family protein \| chr1:10945251-10948825 REVERSE LENGTH=600	SoyBase	E_val: 0	ISS
GO:0006221	GO-bp	Annotation by Michelle Graham. GO Biological Process: pyrimidine nucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0009218	GO-bp	Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide metabolic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003883	GO-mf	Annotation by Michelle Graham. GO Molecular Function: CTP synthase activity	SoyBase	N/A	ISS
KOG2387	KOG	CTP synthase (UTP-ammonia lyase)	JGI		ISS
PTHR11550	Panther	CTP SYNTHASE	JGI		ISS
PF00117	PFAM	Glutamine amidotransferase class-I	JGI		ISS
PF06418	PFAM	CTP synthase N-terminus	JGI		ISS
UniRef100_G7LJD6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CTP synthase like protein n=1 Tax=Medicago truncatula RepID=G7LJD6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KWW6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KWW6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g33510

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g33510 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g264800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g33510

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g33510

Limit To All Plant Sequences

>Glyma08g33510.1   sequence type=CDS   gene model=Glyma08g33510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGTACGTGCTGGTGACTGGTGGAGTTGTTAGTGGCCTTGGCAAAGGTGTTACTGCGAGTAGTATTGGTTTGCTTCTCAAAGCTTGTGGACTTAGAGTTACTGCCATTAAAATTGATCCTTACTTAAACACAGATGCTGGAACAATGTCCCCCTTTGAGCATGGAGAAGTGTTTGTGTTGGATGATGGTGGTGAGGTGGACCTGGATCTTGGAAACTATGAGCGTTTTATGGACATCAAGTTGACCCGTGATAATAACATAACTACTGGGAAGATTTACCAGTCTGTCATTGACAAAGAGAGGAGAGGAGACTATTTGGGAAAAACTGTTCAGGTTGTCCCTCATATCACTGATGCTATTCAAGATTGGATTGAAAGAGTGGCCCACATACCTGTAGATGGAAAGACCAGTCCAGCTGATGTATGTGTCATAGAATTGGGTGGAACCATAGGAGATATTGAGTCCATGCCATTTATTCAGGCATTAGGACAATTCTCATACAGAGTAGGTGCTGGCAACTTTTGCTTAGTTCATGTCAGCCTTGTTCCTGTTTTGAATGTTGTTGGTGAACAGAAAACAAAACCAACCCAGCATAGTGTTCGTGCACTGCGTGGCCAAGGGCTGACTCCACATATCTTAGCATGCCGCAGCACTATGGTACTGGATGAGAATGCAAAGGGAAAACTCTCTCAATTTTGCCTAATTCCGGCAGAAAACATTGTTACCCTTTATGATGTTCCCAACATCTGGCACATTCCTTTGCTTTTAAGAGATCAGAAGGCACATGAAGCAATGTTTAAAGTGCTGAACCTTCATGGTGTAACTAAAGAGCCTAATTTAGAGGAATGGACTTGCAGAGCTGAATCTAGTGATTTGCTTCATGAACCAGTTCGTATAGCCTTAGTGGGGAAATATACGTGCCTTTCAGATTCCTACCTCTCCGTTCTAAAGGCCTTACTGCATGCTTCTGTTGATTGCCAAAAGAAACTTGTTGTGGACTGGATTCCAGCTAGCAACCTTGAAAGTGCAACTGCAAAAGAGAATCCTGATGCTTTTAAGGCAGCATGGAAGTTATTAAAGGGTGCAGATGGTGTTCTTGTTCCTGGAGGGTTTGGAGATAGAGGAGTGCAAGGAAAAATTATTGCAGCCAAATATGCCCGTGAAAACAGGATTCCATTCCTTGGCATTTGTCTTGGAATGCAGATTGCTGTCATAGAGTTTGCACGATCTGTTCTTGGTGTACAAGATGCTAACAGCACTGAATTTGAGCCCCATACCAAAAGTCCATACATCATATTTATGCCTGAGGGATCAAAAACACATATGGGAGGCACCATGCGCCTTGGATCTAGGAGGACATATTTCCAGACCAAGGAATGCAAATCTGCAAAATTATATGGCTGCAAAAGCTTCATTGATGAGAGACATCGGCATAGATATGAGGTGAATCCGGATTTAGTGGCACGCCTTGAAAATGCTGGTCTTTCTTTTACTGGAAAGGATGAAACAGGTCAACGCATGGAGATTGTTGAACTACCTAACCATCCTTATTTTATCGGTGCTCAATTCCATCCTGAATTTAAATCAAGACCAGGAAAACCTTCTCCTTTGTTCTTAGGATTCATTGGAGCAGCATGTGGACAATTGGATGCTGTCTTACAGCGCTCTTCAATTGTTGATAATGGTCTCTCAAAAGGAGTCATTAATGATATCTCTGCAGTCAAAACATACCGAACAAGAACCGCTACAAGGACAACTTATAGGTCTGCTGAATATGTATATGGGAGTTGCAATGGATTGCATTTCTAA

Predicted protein sequences of Glyma08g33510

Limit To All Plant Sequences

>Glyma08g33510.1   sequence type=predicted peptide   gene model=Glyma08g33510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKYVLVTGGVVSGLGKGVTASSIGLLLKACGLRVTAIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQSVIDKERRGDYLGKTVQVVPHITDAIQDWIERVAHIPVDGKTSPADVCVIELGGTIGDIESMPFIQALGQFSYRVGAGNFCLVHVSLVPVLNVVGEQKTKPTQHSVRALRGQGLTPHILACRSTMVLDENAKGKLSQFCLIPAENIVTLYDVPNIWHIPLLLRDQKAHEAMFKVLNLHGVTKEPNLEEWTCRAESSDLLHEPVRIALVGKYTCLSDSYLSVLKALLHASVDCQKKLVVDWIPASNLESATAKENPDAFKAAWKLLKGADGVLVPGGFGDRGVQGKIIAAKYARENRIPFLGICLGMQIAVIEFARSVLGVQDANSTEFEPHTKSPYIIFMPEGSKTHMGGTMRLGSRRTYFQTKECKSAKLYGCKSFIDERHRHRYEVNPDLVARLENAGLSFTGKDETGQRMEIVELPNHPYFIGAQFHPEFKSRPGKPSPLFLGFIGAACGQLDAVLQRSSIVDNGLSKGVINDISAVKTYRTRTATRTTYRSAEYVYGSCNGLHF*

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