SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma08g33300): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma08g33300): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma08g33300

Feature Type:gene_model
Chromosome:Gm08
Start:29873402
stop:29874954
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g33300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G11790AT Annotation by Michelle Graham. TAIR10: N-MYC downregulated-like 2 | chr5:3799682-3802496 FORWARD LENGTH=344 SoyBaseE_val: 5.00E-42ISS
GO:0030154GO-bp Annotation by Michelle Graham. GO Biological Process: cell differentiation SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR11034Panther N-MYC DOWNSTREAM REGULATED JGI ISS
PTHR11034:SF3Panther N-MYC DOWNSTREAM REGULATED-RELATED JGI ISS
PF03096PFAM Ndr family JGI ISS
UniRef100_C6T7K8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T7K8_SOYBN SoyBaseE_val: 4.00E-53ISS
UniRef100_G7IB94UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pollen-specific protein SF21 n=1 Tax=Medicago truncatula RepID=G7IB94_MEDTR SoyBaseE_val: 8.00E-44ISS

Expression Patterns of Glyma08g33300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g33300 not represented in the dataset
Glyma08g33300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g33300 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma08g33300
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g33300
>Glyma08g33300.1   sequence type=CDS   gene model=Glyma08g33300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCTCTGTTATTTTGTCTAAGACATTGGAGTTTGTACTTTTTCATGAGTTATTGCAATTGGGAGTTGCTACCATTGATCCAGATGATCCAATTCTTTCTGCTGATGACTTGGCTAATCAAATAGCTGAAGTTCTTAACTATTTTGGTCATAGTACAGTCATGTGTATGGGAGTAACTGTTGGGGCTTACATTCTGACCTTATTTGCTATGAAGTATAAACATCGTGTTCTTGGTTTGGTACTAATTTCTCCTTTATGTAAAGCACCATCTTGGACTGAATGGTGGTCATGTGAAATTTACTCTACTTTTATGGCATGTGTGGGGAAGTTCGAGGCAGTGATTATTTGCCAGAGTCAGATGTACGTATCATTGGATGAGAGGCAGAGTTTGAATGTGTGGCGGTTCCTTGAATCAATTAATGGGCAAGATAACAAACACTTCAAAATTGTGATGAAGATACTAGTACACAATTGTCGAACACTTCTCTGA
Predicted protein sequences of Glyma08g33300
>Glyma08g33300.1   sequence type=predicted peptide   gene model=Glyma08g33300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
SSVILSKTLEFVLFHELLQLGVATIDPDDPILSADDLANQIAEVLNYFGHSTVMCMGVTVGAYILTLFAMKYKHRVLGLVLISPLCKAPSWTEWWSCEIYSTFMACVGKFEAVIICQSQMYVSLDERQSLNVWRFLESINGQDNKHFKIVMKILVHNCRTLL*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo