Glyma08g32820 - SoyBase

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Report for Sequence Feature Glyma08g32820

Feature Type:	gene_model
Chromosome:	Gm08
Start:	29165907
stop:	29166261
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g32820

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G43140	AT	Annotation by Michelle Graham. TAIR10: Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein \| chr5:17321570-17323224 FORWARD LENGTH=254	SoyBase	E_val: 4.00E-30	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005778	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisomal membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR11266	Panther	PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2	JGI		ISS
PTHR11266:SF4	Panther	PXMP-2 - RELATED	JGI		ISS
PF04117	PFAM	Mpv17 / PMP22 family	JGI		ISS
UniRef100_I1KWW4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KWW4_SOYBN	SoyBase	E_val: 2.00E-39	ISS
UniRef100_Q8LEC1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Contains similarity to 22 kDa peroxisomal membrane protein n=1 Tax=Arabidopsis thaliana RepID=Q8LEC1_ARATH	SoyBase	E_val: 2.00E-27	ISS

Expression Patterns of Glyma08g32820

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g32820 not represented in the dataset	Glyma08g32820 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g32820 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g264500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g32820

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g32820

Limit To All Plant Sequences

>Glyma08g32820.2   sequence type=CDS   gene model=Glyma08g32820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTTGATGCCAACAATATCAGGTGAAGGTGTGCCTAGAATTATTTCCAGGTTGAGCCAAGATCTACTTCCTACATTATTAGGTGGTGCTATGTTTTGGCCTGTATGTGATTTTGTTACCTTCAGATTCGTTCCAGTCCAATTACAACCATTGATGAATAGTGTCTGCGCATATGTATGGACCATATATTTAGCATACATGGCAAATCAATCGAGTGTGAGCAATACCTAG

Predicted protein sequences of Glyma08g32820

Limit To All Plant Sequences

>Glyma08g32820.2   sequence type=predicted peptide   gene model=Glyma08g32820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ILMPTISGEGVPRIISRLSQDLLPTLLGGAMFWPVCDFVTFRFVPVQLQPLMNSVCAYVWTIYLAYMANQSSVSNT*

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