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Report for Sequence Feature Glyma08g30716

Feature Type:gene_model
Chromosome:Gm08
Start:25764933
stop:25767635
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g30716
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G68550AT Annotation by Michelle Graham. TAIR10: Integrase-type DNA-binding superfamily protein | chr1:25725810-25726784 REVERSE LENGTH=324 SoyBaseE_val: 5.00E-40ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PF00847PFAM AP2 domain JGI ISS
UniRef100_G7ZZD4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ethylene responsive transcription factor 2a n=1 Tax=Medicago truncatula RepID=G7ZZD4_MEDTR SoyBaseE_val: 5.00E-51ISS
UniRef100_I1KWV2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KWV2_SOYBN SoyBaseE_val: 4.00E-162ISS

Expression Patterns of Glyma08g30716
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g30716 not represented in the dataset
Glyma08g30716 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g30716 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g261500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g30716
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma08g30716
>Glyma08g30716.2   sequence type=transcript   gene model=Glyma08g30716   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAGAGATTTGCGCCTGTTTCAATCCGTGTACCAAGGTAGCCACTTTTTTTCTTTTCTTTTGTTTTTTCTGTTAACCCAGACACAGGTGATAGATCGGTCATAAAAAAATATATTTTGGGACAGAAAAATCTTGGCCATAGATTTGTAATCTTTTCATCTCAAAAAATTTCTCGTGCTGTTGTGTCTCTATATATACTGTGCAACTCCATCTCTTACGGTTTCTCTCTTGTTGGTCAGAGGGAGAGTAGTGTGTGTGTGTGTTTTTTGTTTGGATTTCTATGAGGAATCCATTGAAGGAGGAAGAACAGGAGATTTATGTCGTCTTGGTTTTATTTGGAAGTAGTGATTGGAGCTTTGTTGAAGCTCGGGTTCGGTTACGCTTGTGTTTGCTGCATGCTACTCTGGTTGGTGTTGAATTCTGCTGTTTCGATGAGTTTGAGGTCAAAAAGGACATGTTATGGAATTCTGGTTTGTTATGGAGGCTTTCAGATAAAAAAATTCTCTGCTTTCTTCCTCCTTTGGAGAGTGGATCTCACTTGATGTTCTTGAAATTATGAGGGATTTTTTTTTTGGTTTATTAAAAAAAATTATTTTGTTTTGTTGAACAATTTTTCTGGGTATTTTGAGGGGTTTTGACCCAATTTTTTTTACCATGGTGGAGCCTCTTAATCAATCGACTCCTAGGACGAAAAAAATGAAACACAAGCGAAATCCGATTCATGACTCGAAAATGACGAGGAAACTGCGCATCATTTGCAATGATCCTGATGCTACTGACTCTTCATCTGATGAGGATGAGTATTTTGGGAATGTTAGGAAGATGAAGAGAACTGTGCTTGAGATTGCTCTTCCACCTGTTCCGGTTAACCCTGTGGTTGCAGATGAAACTAGTACTGAGAGCACAAACAATGATGAATTGAACCAGACGAAGAGGGTTATGGCGAAAACCCCCTCAGTGAAGAGGCAATCTTGTGGGAAATACAAAGGTGTTCGGATGCGGAAATGGGGCAAATGGGCCGCGGAGATTCGTGACCCTTTCAAGGGCACGCGAATCTGGTTGGGCACTTTCAGCACTGCAGAAGAGGCTTCTCAAGCCTATGAGACCAGAAGGCTTGAGTTTGAGGTCATGGCCAAGGCTCTATCTGATGAGAAGAGCAACAATGGCAGCAGCAACAACAATGTTGTTGCTTCTGCTGAAACTGAAACTGTGGCTGCCCCTGAAAATAACAGTTCAAACTATTATGTTTCTTCTGCTGCAGGTTCTGTATCAGACTCCAAGTCTGCTTTTATGGATGAATCAGAGAGTGTGTTGTCACACACATCACCATCTTCTGTGCTTGAATTGGATACATCTGCTTCCAATTTGATTGGGAGTGGTAAGGTTTCAAGCAATGAAATTGTTGAGACTAAAGGGTTGGAGGCCGAAGTTGCTGAGACTAAAAGTTTGGCAGCTGAATTTGCCGAGCTGGAAATCCAAGATTTGAGTATGCTGAATGTACCATCCCCATCTGCTGTTGCTGCTGCTACGTCTGAGTATGAATTGGATTTGTTGGCATTTGACAGTTTCAAATATGGATTTGATTATGAACATGGCTTTGATGATGATTTTGCTGCCCTGGAAGACATTCACATTTGCAGTTTTGATGATAATGAGCCTAGCGAGCTTCCTGATTACGATTTTGATGACTTTGGTGCTGATGAGTTTGCTGGTTGGATTGAAGAACCCCTCAATATACCTTGCGTATAGATTTTGCAGCTACATAGGAATGAGTTCTATCCAAGAGAATTACAAGTTTTGTGTCATTGCTTAAAAATGCTCTACAGTTTTGTGAGATCTCAGGAAAAAACTAGTTCCTGGGGGTGTTGTTTTGTTTTAATTTATTTGTTTCTTTAGGGAGATGGAAGATCAATGAGAGGTTAAGAGAGAATGCCTTGGTTTTCCTTGTGCTATTAGAGCCGTCCAAGGGTTTTTCAATTTCTATTATCATGAAAGTTCTGAGTGTGTAGAAGTCTATCAAACTTGAATTCTATTATCTTTATGAAAAATTCTATGGTATCCTTGGAAATTTAAAGGTTTTGGTACTGTTGTTGAAAATGCTCTCTCCCTTCTCTTTCCCCTCTCTTATTTGTTGTGTTCAAACTCATTCAACTAATAGTTAAAAAAAGTTATACCAAAATCCTTAAATTTTGTTGGGTACAATAGCAACTCTCTATTTTGATTGCAAATACGTGTGAATTTCGT
Coding sequences of Glyma08g30716
>Glyma08g30716.1   sequence type=CDS   gene model=Glyma08g30716   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGAGCCTCTTAATCAATCGACTCCTAGGACGAAAAAAATGAAACACAAGCGAAATCCGATTCATGACTCGAAAATGACGAGGAAACTGCGCATCATTTGCAATGATCCTGATGCTACTGACTCTTCATCTGATGAGGATGAGTATTTTGGGAATGTTAGGAAGATGAAGAGAACTGTGCTTGAGATTGCTCTTCCACCTGTTCCGGTTAACCCTGTGGTTGCAGATGAAACTAGTACTGAGAGCACAAACAATGATGAATTGAACCAGACGAAGAGGGTTATGGCGAAAACCCCCTCAGTGAAGAGGCAATCTTGTGGGAAATACAAAGGTGTTCGGATGCGGAAATGGGGCAAATGGGCCGCGGAGATTCGTGACCCTTTCAAGGGCACGCGAATCTGGTTGGGCACTTTCAGCACTGCAGAAGAGGCTTCTCAAGCCTATGAGACCAGAAGGCTTGAGTTTGAGGTCATGGCCAAGGCTCTATCTGATGAGAAGAGCAACAATGGCAGCAGCAACAACAATGTTGTTGCTTCTGCTGAAACTGAAACTGTGGCTGCCCCTGAAAATAACAGTTCAAACTATTATGTTTCTTCTGCTGCAGGTTCTGTATCAGACTCCAAGTCTGCTTTTATGGATGAATCAGAGAGTGTGTTGTCACACACATCACCATCTTCTGTGCTTGAATTGGATACATCTGCTTCCAATTTGATTGGGAGTGGTAAGGTTTCAAGCAATGAAATTGTTGAGACTAAAGGGTTGGAGGCCGAAGTTGCTGAGACTAAAAGTTTGGCAGCTGAATTTGCCGAGCTGGAAATCCAAGATTTGAGTATGCTGAATGTACCATCCCCATCTGCTGTTGCTGCTGCTACGTCTGAGTATGAATTGGATTTGTTGGCATTTGACAGTTTCAAATATGGATTTGATTATGAACATGGCTTTGATGATGATTTTGCTGCCCTGGAAGACATTCACATTTGCAGTTTTGATGATAATGAGCCTAGCGAGCTTCCTGATTACGATTTTGATGACTTTGGTGCTGATGAGTTTGCTGGTTGGATTGAAGAACCCCTCAATATACCTTGCGTATAG

>Glyma08g30716.2   sequence type=CDS   gene model=Glyma08g30716   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGAGCCTCTTAATCAATCGACTCCTAGGACGAAAAAAATGAAACACAAGCGAAATCCGATTCATGACTCGAAAATGACGAGGAAACTGCGCATCATTTGCAATGATCCTGATGCTACTGACTCTTCATCTGATGAGGATGAGTATTTTGGGAATGTTAGGAAGATGAAGAGAACTGTGCTTGAGATTGCTCTTCCACCTGTTCCGGTTAACCCTGTGGTTGCAGATGAAACTAGTACTGAGAGCACAAACAATGATGAATTGAACCAGACGAAGAGGGTTATGGCGAAAACCCCCTCAGTGAAGAGGCAATCTTGTGGGAAATACAAAGGTGTTCGGATGCGGAAATGGGGCAAATGGGCCGCGGAGATTCGTGACCCTTTCAAGGGCACGCGAATCTGGTTGGGCACTTTCAGCACTGCAGAAGAGGCTTCTCAAGCCTATGAGACCAGAAGGCTTGAGTTTGAGGTCATGGCCAAGGCTCTATCTGATGAGAAGAGCAACAATGGCAGCAGCAACAACAATGTTGTTGCTTCTGCTGAAACTGAAACTGTGGCTGCCCCTGAAAATAACAGTTCAAACTATTATGTTTCTTCTGCTGCAGGTTCTGTATCAGACTCCAAGTCTGCTTTTATGGATGAATCAGAGAGTGTGTTGTCACACACATCACCATCTTCTGTGCTTGAATTGGATACATCTGCTTCCAATTTGATTGGGAGTGGTAAGGTTTCAAGCAATGAAATTGTTGAGACTAAAGGGTTGGAGGCCGAAGTTGCTGAGACTAAAAGTTTGGCAGCTGAATTTGCCGAGCTGGAAATCCAAGATTTGAGTATGCTGAATGTACCATCCCCATCTGCTGTTGCTGCTGCTACGTCTGAGTATGAATTGGATTTGTTGGCATTTGACAGTTTCAAATATGGATTTGATTATGAACATGGCTTTGATGATGATTTTGCTGCCCTGGAAGACATTCACATTTGCAGTTTTGATGATAATGAGCCTAGCGAGCTTCCTGATTACGATTTTGATGACTTTGGTGCTGATGAGTTTGCTGGTTGGATTGAAGAACCCCTCAATATACCTTGCGTATAG
Predicted protein sequences of Glyma08g30716
>Glyma08g30716.1   sequence type=predicted peptide   gene model=Glyma08g30716   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVEPLNQSTPRTKKMKHKRNPIHDSKMTRKLRIICNDPDATDSSSDEDEYFGNVRKMKRTVLEIALPPVPVNPVVADETSTESTNNDELNQTKRVMAKTPSVKRQSCGKYKGVRMRKWGKWAAEIRDPFKGTRIWLGTFSTAEEASQAYETRRLEFEVMAKALSDEKSNNGSSNNNVVASAETETVAAPENNSSNYYVSSAAGSVSDSKSAFMDESESVLSHTSPSSVLELDTSASNLIGSGKVSSNEIVETKGLEAEVAETKSLAAEFAELEIQDLSMLNVPSPSAVAAATSEYELDLLAFDSFKYGFDYEHGFDDDFAALEDIHICSFDDNEPSELPDYDFDDFGADEFAGWIEEPLNIPCV*

>Glyma08g30716.2   sequence type=predicted peptide   gene model=Glyma08g30716   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVEPLNQSTPRTKKMKHKRNPIHDSKMTRKLRIICNDPDATDSSSDEDEYFGNVRKMKRTVLEIALPPVPVNPVVADETSTESTNNDELNQTKRVMAKTPSVKRQSCGKYKGVRMRKWGKWAAEIRDPFKGTRIWLGTFSTAEEASQAYETRRLEFEVMAKALSDEKSNNGSSNNNVVASAETETVAAPENNSSNYYVSSAAGSVSDSKSAFMDESESVLSHTSPSSVLELDTSASNLIGSGKVSSNEIVETKGLEAEVAETKSLAAEFAELEIQDLSMLNVPSPSAVAAATSEYELDLLAFDSFKYGFDYEHGFDDDFAALEDIHICSFDDNEPSELPDYDFDDFGADEFAGWIEEPLNIPCV*






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