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Report for Sequence Feature Glyma08g30433

Feature Type:gene_model
Chromosome:Gm08
Start:25758901
stop:25760309
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g30433
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G03450AT Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein | chr5:858954-862238 REVERSE LENGTH=630 SoyBaseE_val: 7.00E-57ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR16047Panther RFWD3 PROTEIN JGI ISS
PTHR16047:SF7Panther RFWD3 PROTEIN-RELATED JGI ISS
UniRef100_G7L3X6UniRef Annotation by Michelle Graham. Most informative UniRef hit: RING finger and WD repeat domain-containing protein n=1 Tax=Medicago truncatula RepID=G7L3X6_MEDTR SoyBaseE_val: 1.00E-70ISS
UniRef100_I1JPQ8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JPQ8_SOYBN SoyBaseE_val: 4.00E-88ISS

Expression Patterns of Glyma08g30433
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g30433 not represented in the dataset
Glyma08g30433 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g30433 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g261400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g30433
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g30433
>Glyma08g30433.1   sequence type=CDS   gene model=Glyma08g30433   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTGATCTGGATGGTGCTCATGTTTTTGCTATGGACATTTCAAATCAAATTTTATTAATTACACAAAAGCGAAAGGCAATAGGTGGAATGCACTTGTTAACTAAAATGAGCTTGATGTCTCCATTTGAGATGCAAAACATCTTACTGCCTTCCGGCACAAATGGTATTAAAGACCTACACATTTCTGCTTCTCATAGTAGTAGCCTGGCTCTCTTTGCTTCTCTAGGAAAGAAATTATCAATGCTCAGCTTGGACAGCGGCAACCTTGTTGTCAATTATGACCTACAGGTAATTGTATTCCAAGTTCCTAAATGGTCTTGTTCATGGGATCTCAACAATTCACATTACATATATGTTGGACTACAGAATGGTTCTGTCTTGGTGTTTGATATGTGGCAAACTGTAGGACCCATGAAATCTCTAGTTGGTTTGACTAGCAACCCTGTGCATACTGTACATGCTCTTGCACAAACTTCAAGTTTGTCTTCTGGTGTTAAAACCATTCTATCTGCATCTGTCGTTGGCCTTTGTTAG
Predicted protein sequences of Glyma08g30433
>Glyma08g30433.1   sequence type=predicted peptide   gene model=Glyma08g30433   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFDLDGAHVFAMDISNQILLITQKRKAIGGMHLLTKMSLMSPFEMQNILLPSGTNGIKDLHISASHSSSLALFASLGKKLSMLSLDSGNLVVNYDLQVIVFQVPKWSCSWDLNNSHYIYVGLQNGSVLVFDMWQTVGPMKSLVGLTSNPVHTVHALAQTSSLSSGVKTILSASVVGLC*






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