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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G25900 | AT | Annotation by Michelle Graham. TAIR10: Homocysteine S-methyltransferase family protein | chr3:9480964-9482684 FORWARD LENGTH=326 | SoyBase | E_val: 0 | ISS |
| GO:0009086 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0008898 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: homocysteine S-methyltransferase activity | SoyBase | N/A | ISS |
| KOG1579 | KOG | Homocysteine S-methyltransferase | JGI | ISS | |
| PTHR21091 | Panther | METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED | JGI | ISS | |
| PTHR21091:SF4 | Panther | 5-METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE | JGI | ISS | |
| PTHR21091:SF6 | Panther | 5-METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE | JGI | ISS | |
| PF02574 | PFAM | Homocysteine S-methyltransferase | JGI | ISS | |
| UniRef100_G7K1K6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Homocysteine s-methyltransferase n=1 Tax=Medicago truncatula RepID=G7K1K6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KWU9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KWU9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g30150 not represented in the dataset |
Glyma08g30150 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g261200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g30150.2 sequence type=transcript gene model=Glyma08g30150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CAACTAACTACACATCCGAATCCATGAACACCAATCTCATAAGGCCTTGTCTCTCGCTCTCGCTCTCGCGTCGCTGCTCTATTCCGTTCTTCACGTGACATCACGGCCTCAAGAAACGTCGTCGTATTAGAGAAAGGCGCGTAACGCATGAAGAGACAAATGTTGCATGATCTGATTGAGAATGCAGGAGGCTGCGCTGTCACCGATGGAGGATTCGCCACGCAGCTCGAAAAGCATGGAGCCTCCATCAACGATCCTCTTTGGAGCGCCATCTATTTGATCAAAGACCCACATCTTATCAAACAGGTTTATTTATTTTCTTTTTGGTTGCTCATTTTCTGTTTTCCCCTGTCTTTGTTTCTCATTCATCATAATCCCGTTTTTTTTTCCTACCAAAACATGGTACTTTATATCCACCGGCTTTACTGACTTACCCCCGTCCGGAACTAACTGACCACCTTTAATGAGATTCTTCCCTTCCAATCAGGTTCACTTGGAATACTTGGAGGCTGGTGCTGATATATTGGTTACTTCATCATACCAGGCTACACTTCCTGGATTTTCATCGAAGGGTCTATCCATTGAGGAAGGGGAATCACTACTAGAGAAGAGTGTCAAATTGGCAGTTGAAGCCCGTGATGGTTTCTGGAATTCAGCTATAATAAATCCTGGGAATAAATACAGAAGAGCTTTGGTTGCAGCCTCCATTGGAAGCTACGGATCTTACCTTGCTGATGGCTCAGAATACAGTGGCTGCTATGGACCTGATGTAAATTTAAAGAAGTTGAAGGATTTTCATCGCCGCAGATTGCAAGTTCTTGTTGAAGCTGGTCCAGATTTACTTGCCTTTGAGACCATTCCAAACAAACTTGAAGCTCAGGCTTGTGTCGAATTGCTTGAAGAAGAAAGTGTCAAAATCCCATCTTGGATCTGTTTTACCACTGTAGATGGTGAGAATGCTCCCTCAGGAGAGAGTTTCAAGGACTGCCTTGAAGCATTAAATAAGAGTAACAAAGTAGATGCTGTTGGTATAAACTGTGCACCTCCCCATCTTATGGAAAATCTCATTTGCAAATTTAAGCAGTTAACAAAGAAGGCCATCATTGTTTATCCCAATAGTGGGGAGGTATGGGATGGTAAAGCCAAGAAATGGCTTCCATCTAAGTGTTTTCACGATGATGAATTTGGATTTAATGCAACAAGGTGGCGTGATTTGGGAGCTAAAATAATAGGAGGTTGTTGCCGGACTACACCCTCCACCATTCAAATTATTTCAAATGCTTTAAGAGAAAAATCTTGATTGTGCTAGTAGATGCAACTTTTTTTGACAAATTGCAATATCTTGTCTAGTTATTTTCTATAATCTATAGTCTAAATTTAAATTGTTTGAAGCTTGTTCATTCAGTTGGAACTTGACATTAGCTTGATTTCATAGATAAATTAACGTAGGTCAACATCAAGATAACCTCTTCACC >Glyma08g30150.3 sequence type=transcript gene model=Glyma08g30150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTAGAGAAAGGCGCGTAACGCATGAAGAGACAAATGTTGCATGATCTGATTGAGAATGCAGGAGGCTGCGCTGTCACCGATGGAGGATTCGCCACGCAGCTCGAAAAGCATGGAGCCTCCATCAACGATCCTCTTTGGAGCGCCATCTATTTGATCAAAGACCCACATCTTATCAAACAGGTTCACTTGGAATACTTGGAGGCTGGTGCTGATATATTGGTTACTTCATCATACCAGGCTACACTTCCTGGATTTTCATCGAAGGGTCTATCCATTGAGGAAGGGGAATCACTACTAGAGAAGAGTGTCAAATTGGCAGTTGAAGCCCGTGATGGTTTCTGGAATTCAGCTATAATAAATCCTGGGAATAAATACAGAAGAGCTTTGGTTGCAGCCTCCATTGGAAGCTACGGATCTTACCTTGCTGATGGCTCAGAATACAGTGGCTGCTATGGACCTGATGTAAATTTAAAGAAGTTGAAGGATTTTCATCGCCGCAGATTGCAAGTTCTTGTTGAAGCTGGTCCAGATTTACTTGCCTTTGAGACCATTCCAAACAAACTTGAAGCTCAGGTTTTTTTCTTTTTTTTTTCCTTTGCCAATAAACATTTTTCATAGACAAGTATACCTTGCTGTAATTTCTTAAACTAAAACTACTGCAAACCTATTCGGCATATATCTTTATTGGACCATATTATAAATCTTAGGAACAACTCAAACCTAGAATTTT >Glyma08g30150.4 sequence type=transcript gene model=Glyma08g30150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CAACTAACTACACATCCGAATCCATGAACACCAATCTCATAAGGCCTTGTCTCTCGCTCTCGCTCTCGCGTCGCTGCTCTATTCCGTTCTTCACGTGACATCACGGCCTCAAGAAACGTCGTCGTATTAGAGAAAGGCGCGTAACGCATGAAGAGACAAATGTTGCATGATCTGATTGAGAATGCAGGAGGCTGCGCTGTCACCGATGGAGGATTCGCCACGCAGCTCGAAAAGCATGGAGCCTCCATCAACGATCCTCTTTGGAGCGCCATCTATTTGATCAAAGACCCACATCTTATCAAACAGGTTCACTTGGAATACTTGGAGGCTGGTGCTGATATATTGGTTACTTCATCATACCAGGCTACACTTCCTGGATTTTCATCGAAGGGTCTATCCATTGAGGAAGGGGAATCACTACTAGAGAAGAGTGTCAAATTGGCAGTTGAAGCCCGTGATGGTTTCTGGAATTCAGCTATAATAAATCCTGGGAATAAATACAGAAGAGCTTTGGTTGCAGCCTCCATTGGAAGCTACGGATCTTACCTTGCTGATGGCTCAGAATACAGTGGCTGCTATGGACCTGATGTAAATTTAAAGAAGTTGAAGGATTTTCATCGCCGCAGATTGCAAGTTCTTGTTGAAGCTGGTCCAGATTTACTTGCCTTTGAGACCATTCCAAACAAACTTGAAGCTCAGAAAGGAAAGTTGTGTCTTGACTTTGTGATGACCTGATACTCATAGTCATTCATCTTGCTTGAAACAGAAGTCATAATGTTTTTGACTTTTTGTAGCTACCTGGGTAAGCTATTTCCATAAGTAAGATTTTTGTAAAATTTTTTTTTTGAGCTGTTCATTATCTATTTTACATGTACTGCAGGACAAATGTTTTAAGTTATAAATCATTTATGTGATTGCTAATGCACTGTTTCTAATTCTTTTACTATCAAGCTAAGTGTTTTACTTTTTACTTTCTACCTTTTCAATTCTAACTTCTTCAACATAG
>Glyma08g30150.1 sequence type=CDS gene model=Glyma08g30150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGAGACAAATGTTGCATGATCTGATTGAGAATGCAGGAGGCTGCGCTGTCACCGATGGAGGATTCGCCACGCAGCTCGAAAAGCATGGAGCCTCCATCAACGATCCTCTTTGGAGCGCCATCTATTTGATCAAAGACCCACATCTTATCAAACAGGTTCACTTGGAATACTTGGAGGCTGGTGCTGATATATTGGTTACTTCATCATACCAGGCTACACTTCCTGGATTTTCATCGAAGGGTCTATCCATTGAGGAAGGGGAATCACTACTAGAGAAGAGTGTCAAATTGGCAGTTGAAGCCCGTGATGGTTTCTGGAATTCAGCTATAATAAATCCTGGGAATAAATACAGAAGAGCTTTGGTTGCAGCCTCCATTGGAAGCTACGGATCTTACCTTGCTGATGGCTCAGAATACAGTGGCTGCTATGGACCTGATGTAAATTTAAAGAAGTTGAAGGATTTTCATCGCCGCAGATTGCAAGTTCTTGTTGAAGCTGGTCCAGATTTACTTGCCTTTGAGACCATTCCAAACAAACTTGAAGCTCAGGCTTGTGTCGAATTGCTTGAAGAAGAAAGTGTCAAAATCCCATCTTGGATCTGTTTTACCACTGTAGATGGTGAGAATGCTCCCTCAGGAGAGAGTTTCAAGGACTGCCTTGAAGCATTAAATAAGAGTAACAAAGTAGATGCTGTTGGTATAAACTGTGCACCTCCCCATCTTATGGAAAATCTCATTTGCAAATTTAAGCAGTTAACAAAGAAGGCCATCATTGTTTATCCCAATAGTGGGGAGGTATGGGATGGTAAAGCCAAGAAATGGCTTCCATCTAAGTGTTTTCACGATGATGAATTTGGATTTAATGCAACAAGGTGGCGTGATTTGGGAGCTAAAATAATAGGAGGTTGTTGCCGGACTACACCCTCCACCATTCAAATTATTTCAAATGCTTTAAGAGAAAAATCTTGA >Glyma08g30150.2 sequence type=CDS gene model=Glyma08g30150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGATTCTTCCCTTCCAATCAGGTTCACTTGGAATACTTGGAGGCTGGTGCTGATATATTGGTTACTTCATCATACCAGGCTACACTTCCTGGATTTTCATCGAAGGGTCTATCCATTGAGGAAGGGGAATCACTACTAGAGAAGAGTGTCAAATTGGCAGTTGAAGCCCGTGATGGTTTCTGGAATTCAGCTATAATAAATCCTGGGAATAAATACAGAAGAGCTTTGGTTGCAGCCTCCATTGGAAGCTACGGATCTTACCTTGCTGATGGCTCAGAATACAGTGGCTGCTATGGACCTGATGTAAATTTAAAGAAGTTGAAGGATTTTCATCGCCGCAGATTGCAAGTTCTTGTTGAAGCTGGTCCAGATTTACTTGCCTTTGAGACCATTCCAAACAAACTTGAAGCTCAGGCTTGTGTCGAATTGCTTGAAGAAGAAAGTGTCAAAATCCCATCTTGGATCTGTTTTACCACTGTAGATGGTGAGAATGCTCCCTCAGGAGAGAGTTTCAAGGACTGCCTTGAAGCATTAAATAAGAGTAACAAAGTAGATGCTGTTGGTATAAACTGTGCACCTCCCCATCTTATGGAAAATCTCATTTGCAAATTTAAGCAGTTAACAAAGAAGGCCATCATTGTTTATCCCAATAGTGGGGAGGTATGGGATGGTAAAGCCAAGAAATGGCTTCCATCTAAGTGTTTTCACGATGATGAATTTGGATTTAATGCAACAAGGTGGCGTGATTTGGGAGCTAAAATAATAGGAGGTTGTTGCCGGACTACACCCTCCACCATTCAAATTATTTCAAATGCTTTAAGAGAAAAATCTTGA >Glyma08g30150.3 sequence type=CDS gene model=Glyma08g30150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGAGACAAATGTTGCATGATCTGATTGAGAATGCAGGAGGCTGCGCTGTCACCGATGGAGGATTCGCCACGCAGCTCGAAAAGCATGGAGCCTCCATCAACGATCCTCTTTGGAGCGCCATCTATTTGATCAAAGACCCACATCTTATCAAACAGGTTCACTTGGAATACTTGGAGGCTGGTGCTGATATATTGGTTACTTCATCATACCAGGCTACACTTCCTGGATTTTCATCGAAGGGTCTATCCATTGAGGAAGGGGAATCACTACTAGAGAAGAGTGTCAAATTGGCAGTTGAAGCCCGTGATGGTTTCTGGAATTCAGCTATAATAAATCCTGGGAATAAATACAGAAGAGCTTTGGTTGCAGCCTCCATTGGAAGCTACGGATCTTACCTTGCTGATGGCTCAGAATACAGTGGCTGCTATGGACCTGATGTAAATTTAAAGAAGTTGAAGGATTTTCATCGCCGCAGATTGCAAGTTCTTGTTGAAGCTGGTCCAGATTTACTTGCCTTTGAGACCATTCCAAACAAACTTGAAGCTCAGGTTTTTTTCTTTTTTTTTTCCTTTGCCAATAAACATTTTTCATAG >Glyma08g30150.4 sequence type=CDS gene model=Glyma08g30150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGAGACAAATGTTGCATGATCTGATTGAGAATGCAGGAGGCTGCGCTGTCACCGATGGAGGATTCGCCACGCAGCTCGAAAAGCATGGAGCCTCCATCAACGATCCTCTTTGGAGCGCCATCTATTTGATCAAAGACCCACATCTTATCAAACAGGTTCACTTGGAATACTTGGAGGCTGGTGCTGATATATTGGTTACTTCATCATACCAGGCTACACTTCCTGGATTTTCATCGAAGGGTCTATCCATTGAGGAAGGGGAATCACTACTAGAGAAGAGTGTCAAATTGGCAGTTGAAGCCCGTGATGGTTTCTGGAATTCAGCTATAATAAATCCTGGGAATAAATACAGAAGAGCTTTGGTTGCAGCCTCCATTGGAAGCTACGGATCTTACCTTGCTGATGGCTCAGAATACAGTGGCTGCTATGGACCTGATGTAAATTTAAAGAAGTTGAAGGATTTTCATCGCCGCAGATTGCAAGTTCTTGTTGAAGCTGGTCCAGATTTACTTGCCTTTGAGACCATTCCAAACAAACTTGAAGCTCAGAAAGGAAAGTTGTGTCTTGACTTTGTGATGACCTGA
>Glyma08g30150.1 sequence type=predicted peptide gene model=Glyma08g30150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKRQMLHDLIENAGGCAVTDGGFATQLEKHGASINDPLWSAIYLIKDPHLIKQVHLEYLEAGADILVTSSYQATLPGFSSKGLSIEEGESLLEKSVKLAVEARDGFWNSAIINPGNKYRRALVAASIGSYGSYLADGSEYSGCYGPDVNLKKLKDFHRRRLQVLVEAGPDLLAFETIPNKLEAQACVELLEEESVKIPSWICFTTVDGENAPSGESFKDCLEALNKSNKVDAVGINCAPPHLMENLICKFKQLTKKAIIVYPNSGEVWDGKAKKWLPSKCFHDDEFGFNATRWRDLGAKIIGGCCRTTPSTIQIISNALREKS* >Glyma08g30150.2 sequence type=predicted peptide gene model=Glyma08g30150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRFFPSNQVHLEYLEAGADILVTSSYQATLPGFSSKGLSIEEGESLLEKSVKLAVEARDGFWNSAIINPGNKYRRALVAASIGSYGSYLADGSEYSGCYGPDVNLKKLKDFHRRRLQVLVEAGPDLLAFETIPNKLEAQACVELLEEESVKIPSWICFTTVDGENAPSGESFKDCLEALNKSNKVDAVGINCAPPHLMENLICKFKQLTKKAIIVYPNSGEVWDGKAKKWLPSKCFHDDEFGFNATRWRDLGAKIIGGCCRTTPSTIQIISNALREKS* >Glyma08g30150.3 sequence type=predicted peptide gene model=Glyma08g30150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKRQMLHDLIENAGGCAVTDGGFATQLEKHGASINDPLWSAIYLIKDPHLIKQVHLEYLEAGADILVTSSYQATLPGFSSKGLSIEEGESLLEKSVKLAVEARDGFWNSAIINPGNKYRRALVAASIGSYGSYLADGSEYSGCYGPDVNLKKLKDFHRRRLQVLVEAGPDLLAFETIPNKLEAQVFFFFFSFANKHFS* >Glyma08g30150.4 sequence type=predicted peptide gene model=Glyma08g30150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKRQMLHDLIENAGGCAVTDGGFATQLEKHGASINDPLWSAIYLIKDPHLIKQVHLEYLEAGADILVTSSYQATLPGFSSKGLSIEEGESLLEKSVKLAVEARDGFWNSAIINPGNKYRRALVAASIGSYGSYLADGSEYSGCYGPDVNLKKLKDFHRRRLQVLVEAGPDLLAFETIPNKLEAQKGKLCLDFVMT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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