Glyma08g29060 - SoyBase

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Report for Sequence Feature Glyma08g29060

Feature Type:	gene_model
Chromosome:	Gm08
Start:	23466729
stop:	23471591
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g29060

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G02750	AT	Annotation by Michelle Graham. TAIR10: Protein phosphatase 2C family protein \| chr3:593601-595457 REVERSE LENGTH=492	SoyBase	E_val: 8.00E-109	ISS
GO:0006007	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucose catabolic process	SoyBase	N/A	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0010193	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ozone	SoyBase	N/A	ISS
GO:0030244	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
KOG0698	KOG	Serine/threonine protein phosphatase	JGI		ISS
PTHR13832	Panther	PROTEIN PHOSPHATASE 2C	JGI		ISS
PTHR13832:SF94	Panther	PROTEIN PHOSPHATASE 2C DELTA	JGI		ISS
PF00481	PFAM	Protein phosphatase 2C	JGI		ISS
UniRef100_G7KTS4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein phosphatase 2c n=1 Tax=Medicago truncatula RepID=G7KTS4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KWS7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KWS7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g29060

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g29060

Paralog	Evidence	Comments
Glyma18g51970	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g29060 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g259100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g29060

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g29060

Limit To All Plant Sequences

>Glyma08g29060.1   sequence type=CDS   gene model=Glyma08g29060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTCAGGCGGTGGAGGTCCTGAACCGGTATGGGACGGATCTGGTTGGGGAGCCGAGAGATTCTGATTCTGAGTGTTTGGCGGGTTTTGAGTGTTTTCTGAACATTGTGAGGGCATTGGGAATGGGATCGTGTATCTCAGAGGTTGGAGCTGGTGGTAATTCACCTCCTCTTCTTCCTTATTCGCCTGAATCCAACATGGATGGTGGAAAGAGAAGAAGGTTGAGGGGTTCCTCTTCGTTTGATTTCAAAGTGCCTGGGAGGATGTTCTTGAATGGTTCAAGCGAGGTTGCATCCATGTATTGCAAGCAAGGAAGAAAAGGGATCAACCAAGATGCTATGCTTGTTTGGGAGAACTTTTGTTCAAAGGAAGACACCATTTTTTGTGGTGTTTTTGATGGTCATGGACCTTATGGCCACAGAGTTGCAAAGAAAGTTAGGGATTCTTTTCCTTTAAAGCTTAATGCCCAATGGGATTTGCATCATAAAAATAGAGACAGACTCAGTGATCATAGCAGTGCCACAGGAAGTTATAAATCTGAAGGGAATGGATTTAGACTGGTGGATGAGAAAACTAGTCCCATTGATCATGAACATGAAGAAACAGATACTATTTTGACATTACGAGAATCTTTTTTGAAGGCTTGTAAGATTATGGACAAAGAACTGAAACTTCATCCTGATATTGACTGCTTTTGGGAAGAAGAGAGGATCAGGCTTCGTAGAGGAAGGGTTTTTTCCCTTCAGAATGAACCTGAGGTGGCTCGAGTTTGGCTGCCTAACTCTGATTTCCCTGGTCTTGCTATGGCTCGGGCATTTGGAGATTTTTGCCTTAAGGACTTTGGATTGATTGCTGTTCCAGATATCTCATATCACCGTCTTACCGAGAAGGATGAATTTGTCGTGTTAGCAACAGATGGGATTTGGGATGTTTTATCAAATGAAGAAGTTGTGGACATTGTAGCACCTGCTCCACGGTCTAGTGCTGCTAGAGCACTGGTTGAGTCAGCTGTTCAGGCATGGAAGACAAAATTTCCTTTTTGTAAGGTTGATGATTGTGCTGCCGTATGCCTCTTCTTTGATTCTGATTCAGATTTCAAGTCAACAGATACCAAAGACAAGTTGATACCGGAGGCATCTATTGACCAATCTGAGAAGTTATCTTTACTTGGTGAAAAGGGAGTTGGAATGGAAGCTGAAAAACAGCAGCAATAG

Predicted protein sequences of Glyma08g29060

Limit To All Plant Sequences

>Glyma08g29060.1   sequence type=predicted peptide   gene model=Glyma08g29060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTQAVEVLNRYGTDLVGEPRDSDSECLAGFECFLNIVRALGMGSCISEVGAGGNSPPLLPYSPESNMDGGKRRRLRGSSSFDFKVPGRMFLNGSSEVASMYCKQGRKGINQDAMLVWENFCSKEDTIFCGVFDGHGPYGHRVAKKVRDSFPLKLNAQWDLHHKNRDRLSDHSSATGSYKSEGNGFRLVDEKTSPIDHEHEETDTILTLRESFLKACKIMDKELKLHPDIDCFWEEERIRLRRGRVFSLQNEPEVARVWLPNSDFPGLAMARAFGDFCLKDFGLIAVPDISYHRLTEKDEFVVLATDGIWDVLSNEEVVDIVAPAPRSSAARALVESAVQAWKTKFPFCKVDDCAAVCLFFDSDSDFKSTDTKDKLIPEASIDQSEKLSLLGEKGVGMEAEKQQQ*

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