Glyma08g29010 - SoyBase

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Report for Sequence Feature Glyma08g29010

Feature Type:	gene_model
Chromosome:	Gm08
Start:	23353326
stop:	23371113
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g29010

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G05830	AT	Annotation by Michelle Graham. TAIR10: trithorax-like protein 2 \| chr1:1754452-1761225 FORWARD LENGTH=1083	SoyBase	E_val: 0	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0051568	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3-K4 methylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0042800	GO-mf	Annotation by Michelle Graham. GO Molecular Function: histone methyltransferase activity (H3-K4 specific)	SoyBase	N/A	ISS
PTHR13793	Panther	PHD FINGER PROTEINS	JGI		ISS
PTHR13793:SF28	Panther		JGI		ISS
PF00855	PFAM	PWWP domain	JGI		ISS
PF00856	PFAM	SET domain	JGI		ISS
PF05964	PFAM	F/Y-rich N-terminus	JGI		ISS
PF05965	PFAM	F/Y rich C-terminus	JGI		ISS
UniRef100_G0ZE02	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Trithorax-like protein n=1 Tax=Phaseolus vulgaris RepID=G0ZE02_PHAVU	SoyBase	E_val: 0	ISS
UniRef100_I1KWS1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KWS1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g29010

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g29010

Paralog	Evidence	Comments
Glyma18g51890	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g29010 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g258500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g29010

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g29010

Limit To All Plant Sequences

>Glyma08g29010.1   sequence type=CDS   gene model=Glyma08g29010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCAGCGTTCCAAGAAGGTAGCGGCGGTGGCCGCGGCGGCGACGAAGACGCGACCATCGACGTGCACACCACGCGCGGCACTCCCATCCGCTACCTCCCCCTCGACCACCTCTACTCCGCCACCTCACCCTGCCGCGTCACCGCCAGCGGCTCCTCCAACGTCATGTCGAAGAAAATCAAAGCTCGCAAACTCACCCTAACGCATAATAATAATAATAATAATAATAATCATTACAACAACCACGAACACAAGAAAACGACCTCGTCTTCTTCTTCGTCCCTGGCCCTTCCTCCCAAGCCCCCTCTCCTCTTCGTCTACTCGCGCCGGCGCAAGAGGCATTCCCCTGCCGCTGCGACGACGGAGAACGACGAGAGCGAGAAGAGGTTGCTCAAGAAGAGGAAAATTGGGAGCACCGAGTTGGAGAGGTTGGGTGTGGATTTGAATACTGCGATTGGGGATGTTGACGGGCCCAGATTGAGGGAATGTAGAAATCAATTTGGGAATTCTGGTGCTGCTGGGAATGCTAAGTATGGTTCCTTGGAGAATTTGCCCAAAGTGTTGCCCGAATCTCGCAATGTGAAGAAATGGGTCGGGTTGAGTTTTGATAATGCTGATCCCGAGGCATTTGTTGGATTACGATGCAAGGTTTACTGGCCCATGGATTTAAAAGCATACATTGGCTACGTCAGAAGTTATGATAAGGAAACTAAGATACATCATGTCAAGTACGACGATGGGGATGAGGAAAATTTAATTATTGCAAATGAAAATATAAGATTCCATGTTTCCCGCGATGAGCTGAAACATTTAAAATTGAATTTTGCCAAAGTTCGTGACAATAATGTCTCTGATTATAATGTTGAAGAGATGCTTGCATTGGCTGCAAGTTTGGATGATTGTCAAGACTTCGAGCCTGGGGATATCATATGGGCCAAGCTAACAGGCCATGCAATGTGGCCAGCTGTTGTTCTGGATGAATCACTTGCTAGCAACTGTAAGGGTTTAAAGATGTTTTTGGGAGGAAGCTCAGTTCCTGTCCAATTTTTTGGCACCCATGACTTTGCAAGGGTTAGACTGCAACAGGTGAAATCATTTCTCAGTGGACTTCTTACTGATCTACACTCAAAATGCAAGAAACATAGTTTTATTGAAGGTTTAGAAGAGGCTAAAAGATATTTAAGTGAACAGAAGCTTCCATTGGAGATGCTAGAGTTGCAGAAAAGATGTACAGCTGATGGCTGTAACAACGTAAGTGGAGAGGATGGAGGATGCTCAGATTCAGGTGATGATTGTTTAAATGGCAAGGGGACTTTGATGGCTCTGGAAACCGTTGAAAATTTTCCATATGAAGTTGGAGACCTCCAAATTCTAAGCCTTGGAAAAATAGTTAAAGATTCTGCTTTCAGGGATGGAAGATTCATCTGGCCTGAAGGGTACACAGCAGTGAGGAAGTTTACTTCAGTTACAGACCCTAAAGTTTCTGCTCCTTATAAGATGGAGGTGTTGAGAGATCCAGAATCCAAACTTCGTCCTCTGTTTAGAGTGACAGTTGAAGGTGGTGAGCAGTTCAATGGTTATACACCATCTGCTTCCTGGAATGAGGTATACGAAAAGATAAAGAAAATGGAAAAGGATGCTTCTGAAGGTACTGTTGCTGAAGGTGGGGAAGAAAAGGGCTACGAATCTGGGTCTGATATGTTTGGTTTCTCCAATCCTAAAGTACTTAAACTTATACAGGGATTGTCTAAATCCAAAATCTCTTCAAAGAACTCAATTTGCAAGTTAGGTTCCAGAAGATGTAATAATAACTTGCCTCTTGGTTATAGGCAAGTTCATATTAACTGGTTTGACCTCGATAAGTGCAATGTGTGCCACATGGATGAGGAGTATGAGAACAATCTGTTTCTGCAGTGTGACAAATGCAGAATGATGGTCCATGCTAGATGCTATGGGGAACTGGAACCTGTTAATGGGGTGCTATGGTTATGCAACTTATGTCGTTCGGGTGCCCCTCCTCCACCTTGCTGCTTATGTCCACTGATAGGTGGTGCAATGAAGCCTACTACAGATGGCCGGTGGGCTCATTTGGCTTGTGCCATGTGGATACCTGAAACTTGCTTAGCTGATGTCAAGAGAATGGAGCCTATTGATGGTATGAGTAGAATCAGTAAGGACCGCTGGAGGTTGTTATGCAGCATATGTGGTGTGTCTTATGGTGCCTGTATCCAATGTTCAAATAATTCTTGTCGAGTAGCATATCATCCACTCTGTGCACGTGCTGCTGGTCTCTGTGTTGAGCTTGAGAATGAGGACAGGCTGTATCTACTTTCTGTTGATGATGATGAAGATCAGTGCATACGCTTACTTTCTTTCTGCAAGAAACATAGGCAACCATCTAATGAACATTCTGTTGCTGATGATCGTATAGTCCGAGTTTCTGGTCTATGTTCAGACTATGAACCACCGCCTAATCCGTCTGGTTGTGCTCGAAGTGAGCCATATGATTACTTTGGCAGGAGAGGTCGAAAAGAACCTGAAGCACTTGCAGCTGCATCGTTGAAACGTTTGTTTGTGGAGAATCAACCTTACTTAGTAGGTGGATACTGCCAGCATGGTTCATTAAACAACCTAGAGCCTTCTGGCAGAGGAGTCTGCTCTAAATTCTTTTGTAGCCAACAAAGGCTGAGAACCTCTCGGATTGACACATCAAACAGCATACTTTCTATCTCTGAAAAATATACGTACATGAGGGAAACCTTTCGGAAACGGCTGGCATTTGGGAAATCAAGAATTCATGGATTTGGCATCTTTGCAAAGCATCCATATAAAGGTGGAGACATGGTGATTGAATACACTGGGGAACTTGTTAGACCACCTATAGCTGACCGGAGAGAGCACTTCATATACAATTCGTTGGTGGGTGCTGGAACATATATGTTTCGTATCGATGATGAACGAGTCATTGATGCTACTAGAGCAGGAAGCATTGCTCATTTAATTAATCATTCTTGTGCACCAAATTGCTATTCCAGAGTTATAAGCGTTAATGGCGATGAACATATTATAATATTTGCGAAGAGGGACATTAAACAGTGGGAAGAGCTTACATATGATTACAGATTTTTCTCAATTGATGAACGACTTCCTTGTTACTGTGGCTTCCCAAAGTGCCGAGGTATAGTAAATGATACTGAGGCAGAAGAACGAGCTGCTACCCTATATGCACCACGAAGCGAATTAATAGATTGGAGAGGAGAATGA

Predicted protein sequences of Glyma08g29010

Limit To All Plant Sequences

>Glyma08g29010.1   sequence type=predicted peptide   gene model=Glyma08g29010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAAFQEGSGGGRGGDEDATIDVHTTRGTPIRYLPLDHLYSATSPCRVTASGSSNVMSKKIKARKLTLTHNNNNNNNNHYNNHEHKKTTSSSSSSLALPPKPPLLFVYSRRRKRHSPAAATTENDESEKRLLKKRKIGSTELERLGVDLNTAIGDVDGPRLRECRNQFGNSGAAGNAKYGSLENLPKVLPESRNVKKWVGLSFDNADPEAFVGLRCKVYWPMDLKAYIGYVRSYDKETKIHHVKYDDGDEENLIIANENIRFHVSRDELKHLKLNFAKVRDNNVSDYNVEEMLALAASLDDCQDFEPGDIIWAKLTGHAMWPAVVLDESLASNCKGLKMFLGGSSVPVQFFGTHDFARVRLQQVKSFLSGLLTDLHSKCKKHSFIEGLEEAKRYLSEQKLPLEMLELQKRCTADGCNNVSGEDGGCSDSGDDCLNGKGTLMALETVENFPYEVGDLQILSLGKIVKDSAFRDGRFIWPEGYTAVRKFTSVTDPKVSAPYKMEVLRDPESKLRPLFRVTVEGGEQFNGYTPSASWNEVYEKIKKMEKDASEGTVAEGGEEKGYESGSDMFGFSNPKVLKLIQGLSKSKISSKNSICKLGSRRCNNNLPLGYRQVHINWFDLDKCNVCHMDEEYENNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRSGAPPPPCCLCPLIGGAMKPTTDGRWAHLACAMWIPETCLADVKRMEPIDGMSRISKDRWRLLCSICGVSYGACIQCSNNSCRVAYHPLCARAAGLCVELENEDRLYLLSVDDDEDQCIRLLSFCKKHRQPSNEHSVADDRIVRVSGLCSDYEPPPNPSGCARSEPYDYFGRRGRKEPEALAAASLKRLFVENQPYLVGGYCQHGSLNNLEPSGRGVCSKFFCSQQRLRTSRIDTSNSILSISEKYTYMRETFRKRLAFGKSRIHGFGIFAKHPYKGGDMVIEYTGELVRPPIADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCAPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSIDERLPCYCGFPKCRGIVNDTEAEERAATLYAPRSELIDWRGE*

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