SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g28974

Feature Type:gene_model
Chromosome:Gm08
Start:23343954
stop:23345593
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g28974
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G39430AT Annotation by Michelle Graham. TAIR10: Disease resistance-responsive (dirigent-like protein) family protein | chr2:16463422-16464390 FORWARD LENGTH=322 SoyBaseE_val: 2.00E-97ISS
GO:0009807GO-bp Annotation by Michelle Graham. GO Biological Process: lignan biosynthetic process SoyBaseN/AISS
GO:0048765GO-bp Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR21495Panther NUCLEOPORIN-RELATED JGI ISS
PTHR21495:SF10Panther SUBFAMILY NOT NAMED JGI ISS
PF03018PFAM Dirigent-like protein JGI ISS
UniRef100_C6TDR1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TDR1_SOYBN SoyBaseE_val: 0ISS
UniRef100_G7KSY8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Disease resistance response protein n=1 Tax=Medicago truncatula RepID=G7KSY8_MEDTR SoyBaseE_val: 1.00E-169ISS

Expression Patterns of Glyma08g28974
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g28974 not represented in the dataset
Glyma08g28974 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g28974
ParalogEvidenceComments
Glyma18g51880 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g28974 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g258300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g28974
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g28974
>Glyma08g28974.1   sequence type=CDS   gene model=Glyma08g28974   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAACATTTTCCTACACAATTGGGGCAACACTTGCAAGGCTATCCTCTGCCTCTTATTCCTAACCCCAACCCTTTTTATTGCAAACTCTGCAAGGATCCTAGATGAAGTGGAATCCCAACCCCAAGCCATAGGCATTCTACCAGCACCTGGAGCTGTCAATCCTTCACTCACAACAGGTCCAGTCACCACCACTTTGCCACCTGGCCAAACACCTGCAACCACCACCACATCACAGGTTGGCCCTGCCACCACTTCGGCAAGTGGGCAAACACCGGCAGCCGCCAGCACCGTAAACCCTGGTGGTACTACAGAAGACTCTGGAGATGAAGATGATAATGAAGTAGAGCCACCAGTTCCAGATAATGCAGCACCAGTGACACCAAACCCTGTGGCAAAAGAAGCATCATTCTCTTTCTTCATGCATGACATCCTTGGAGGGTCACGTCCATCAGCAAGAGTGGTTGCAGGAATAGTGGCCAACACTGATGTGACTGGCCTACCATTCTCGAAGCTCAACAACAACCTCTTCCCAATCACTGGAGGAATCCCACTGGTAAACCCCAAGCTCAACGGCATCATCACCAACAACAATCTCCCAAACCTTGTAGGCCTAAGTGGTGCACAATCCTCCACTGTCTTCAAGAACAGTGGCACCAGCAACACTGTCACTGGCAGCAACAACCAGCCATTTGTCTCAGCAGGTAACCTCCCTGCAGGATTCACCATCCAGAAGCTCATGTTCGGGTCCGTGACCGTCATCGATGACCAGTTGACAGAAGGGCACGAGCTTGATTCTGCTGTGATTGGAAAGGCACAAGGGTTCTACTTGGCAAGTTCATTGGATGGTACTAGCCAGACCATTTTGCTGACAGTTTTGGTGCATGGTGGTGAACATGAACATCATGATTTGGTGGATGACAGTATCAATCTCTTTGGGATTCATAGGACAGCTTCATCAGAATCTGAGGTAGCAGTGATTGGTGGGACTGGCAAGTATGAGAATGCTAGAGGGTATGCTTCACTTGAGACTCTTCTCAAGGAGGACCAGCACACCACAGATGGGGTGGACACCATCCTGCATTTCAATGTCTACCTCACTGAGTAG
Predicted protein sequences of Glyma08g28974
>Glyma08g28974.1   sequence type=predicted peptide   gene model=Glyma08g28974   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANIFLHNWGNTCKAILCLLFLTPTLFIANSARILDEVESQPQAIGILPAPGAVNPSLTTGPVTTTLPPGQTPATTTTSQVGPATTSASGQTPAAASTVNPGGTTEDSGDEDDNEVEPPVPDNAAPVTPNPVAKEASFSFFMHDILGGSRPSARVVAGIVANTDVTGLPFSKLNNNLFPITGGIPLVNPKLNGIITNNNLPNLVGLSGAQSSTVFKNSGTSNTVTGSNNQPFVSAGNLPAGFTIQKLMFGSVTVIDDQLTEGHELDSAVIGKAQGFYLASSLDGTSQTILLTVLVHGGEHEHHDLVDDSINLFGIHRTASSESEVAVIGGTGKYENARGYASLETLLKEDQHTTDGVDTILHFNVYLTE*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo