Glyma08g28920 - SoyBase

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Report for Sequence Feature Glyma08g28920

Feature Type:	gene_model
Chromosome:	Gm08
Start:	23268446
stop:	23275603
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g28920

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G33540	AT	Annotation by Michelle Graham. TAIR10: C-terminal domain phosphatase-like 3 \| chr2:14204081-14208797 REVERSE LENGTH=1241	SoyBase	E_val: 0	ISS
GO:0000394	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation	SoyBase	N/A	ISS
GO:0006366	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription from RNA polymerase II promoter	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009788	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of abscisic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004721	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphoprotein phosphatase activity	SoyBase	N/A	ISS
GO:0008022	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein C-terminus binding	SoyBase	N/A	ISS
GO:0008420	GO-mf	Annotation by Michelle Graham. GO Molecular Function: CTD phosphatase activity	SoyBase	N/A	ISS
PTHR23081	Panther	RNA POLYMERASE II CTD PHOSPHATASE	JGI		ISS
PF00533	PFAM	BRCA1 C Terminus (BRCT) domain	JGI		ISS
PF03031	PFAM	NLI interacting factor-like phosphatase	JGI		ISS
UniRef100_G7KSX8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RNA polymerase II C-terminal domain phosphatase-like protein n=1 Tax=Medicago truncatula RepID=G7KSX8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002337C5A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337C5A related cluster n=1 Tax=unknown RepID=UPI0002337C5A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g28920

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g28920

Paralog	Evidence	Comments
Glyma18g51840	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g28920 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g257900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g28920

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g28920

Limit To All Plant Sequences

>Glyma08g28920.1   sequence type=CDS   gene model=Glyma08g28920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTTTGGATCGTTATTGGATTGTGAGGTATTGGGAAAATTGGAGAAGATGGGGAAGGAGGCTGAGGATGTGGAAGAGGGTGAGATTTCGGATACTGCTTCGGTGGAAGAGATTTCAGCCGAGGATTTCAATAAGCAAGATGTTAAGTTGTTAAATAATAACAATAAGCCCAATGGAAGTGATGCTAGGGTTTGGGCTGTTCATGATCTTTACTCAAAGTACCCTACTATATGTCGCGGCTATGCATCGGGCTTGTATAATCTTGCTTGGGCACAGGCCGTGCAGAATAAGCCTTTGAATGATATTTTTGTGATGGAAGTGGACTCTGATGCCAATGCTAACAGTAACCGCAACAGCTCCCATCGACTGGCCTCTGTTGCTGTGAATCCTAAGGATGTGGTGGTGGTGGATGTGGACAAAGAGGAAGGGGAGTTGGAGGAGGGTGAGATCGATGCTGATGCGGAACCCGAAGGAGAAGCAGAGAGTGTTGTTGTGGCTGTTTCTGATTCTGAGAAGCTTGATGATGTGAAGATGGATGTTTCTGATTCCGAGCAGCTTGGTGCGAGGGGTGTTCTGGAGGGTGTTACCGTTGCTAATGTGGTTGAGTCGTTTGCTCAAACTTGCAGTAAGCTGCAAAATACCCTTCCTGAAGTGCTCTCTAGACCTGCTGGTTCTGAGAAGGATGATCTCGTTCGCTTGTCATTTAATGCTACTGAAGTGGTTTATTCTGTGTTTTGCTCTATGGACTCTTCGGAGAAAGAACAGAACAAGGATAGCATATTAAGATTGCTTTCTTTTGTGAAGGATCAACAACAGGCTCAATTATTTTCTCCAGAGCATGTAAAAGAGATTCAGGGCATGATGACTGCAATTGATTCTGTTGGTGCTTTAGTAAATAGTGAGGCTATTGGCAAGGAGAAAGAATTGCAGACCACTGAGATAAAGACTCAAGAAAATTCAGCTGTAGAAGTGCAGATCCATGAGATAAAGACTCAGGAAAATCAGGCTGTAGAAGCTGCTGAATTGATTTCTTATAGTAAGCCTTTGCATAGGGACATAACTGGGACATCACAGGCTTTAAAATTTGGACAAAATAGTATTAAAGGCAGAGGGGTTCTGCTCCCTCTGTTAGACCTTCACAAGGATCATGATGCAGACAGTTTACCATCACCAACTCGAGAAGCACCTTCCTGCTTCCCTGTGAATAAGTTACTTTCTGTTGGAGAGTCTATGGTTAGATCTGGGTCAGCATCTGCTAAGATGGAACTTGATAGTGAAGGTTCTAAATTTCATCTATATGAAACTGATGCTTTGAAAGCTGTTTCCACATATCAACAGAAGTTTGGTCGAAGTTCCCTTTTTACAAATGATAAATTTCCAAGTCCAACTCCTTCAGGTGACTGTGAAGATGAGGTTGTTGATACAAACGAGGAGGTCTCTAGTGCTTCTACTGGTGATTTTTTAACAAGCACTAAACCAACTCTTTTGGATCAGCCACCTGTTTCTGCTACTTCCATGGATAGGTCCAGCATGCATGGATTCATTAGTTCTAGAGTGGATGCAACAGGTCCTGGGTCTTTCCCGGTGAAAAGCTCTGCAAAGAATAGAGATCCCAGGCTTCGTTTCATTAATTCTGATGCAAGTGCTGTGGATAACCTGTCTACATTGATAAATAATATGTCTAAAGTGGAATATTCTGGAACAACAATCTCAAGGAAACAAAAGGCTGCTGAAGAACCTTCTTTGGATGTTACTGTATCAAAAAGACTAAAAAGTTCTTTGGAAAATACTGAGCATAATATGAGCGAAGTAAGAACTGGAAGTGGTGGTTGGTTGGAAGAGAATACTGGGCCTGGAGCTCAGTTGATAGAGAGGAATCATTTAATGGACAAATTTGGACCCGAAGCCAAAAAGACTTTGAATACAGTCAGTAGTTCCTGTACTGGTTCTGATAATTTCAATGCAACAAGCATTAGAAATGAGCAGGCACCAATTACAGCTAGTAATGTGCTAGCTTCCTTACCTGCTCTATTGAAAGAAGCATCTGTAAATCCAATCATGCTTGTTAACATACTTAGATTAGCTGAAGCCCAGAAGAAATCTGCTGATTCTGCTGCAATTATGCTGCTGCATCCAACAAGCTCAAATCCGGCAATGGGAACAGACTCAACAGCGAGTATTGGTTCATCAATGGCCACTGGTCTTCTTCAAAGTTCTGTTGGAATGCTTCCTGTTTCATCACAATCAACTTCCACGGCACAAACCCTACAAGATGATTCAGGAAAGATTCGCATGAAACCCCGTGATCCACGGCGCATTCTCCACACTAATAATACTATCCAGAAGAGTGGGGACTTGGGGAATGAGCAATTCAAAGCCATTGTATCCCCTGTGTCTAACAACCAGAGAACAGGGGACAATGTCAATGCCCCGAAGCTTGAGGGTAGGGTGGATAATAAATTAGTGCCTACTCAATCAAGTGCACAACCTGATATTGCTCGACAATTCACCCGGAATCTGAAAAACATTGCTGATATTATGTCTGTTTCCCAAGAATCATCAACTCACACTCCTGTTTCTCAAAATTTTTCTTCTGCATCTGTTCCGCTTACTTCAGATAGAGGGGAACAAAAATCCGTTGTGTCAAGCTCTCAGAACCTGCAGGCTGACATGGCATCTGCTCACGAAACAGCTGCATCAGTTACCTCTCGATCCCAGAGTACATGGGGAGATGTTGAGCATCTTTTTGAAGGTTATGACGAGCAGCAGAAGGCTGCTATACAGAGAGAGAGGGCCAGGAGGATTGAAGAACAGAATAAAATGTTTGCTGCTCGGAAATTGTGCCTTGTATTGGACCTAGACCACACGCTACTTAATTCTGCCAAGTTTGTGGAAGTTGATCCTCTGCACGATGAGATATTGAGAAAGAAAGAAGAGCAGGACCGTGAGAAACCTCACAGACATCTTTTTCGCTTTCCTCATATGGGAATGTGGACTAAACTCAGACCAGGAATCTGGAACTTCTTGGAGAAGGCTAGTAAGCTCTATGAGTTGCATCTTTACACTATGGGAAACAAGCTATATGCGACAGAAATGGCAAAGGTGCTTGATCCAAAGGGAGTTTTGTTTGCTGGAAGAGTTATCTCTAGAGGTGATGATACTGATTCAGTTGATGGTGAGGAGAGGGTTCCCAAAAGCAAAGATTTGGAAGGCGTTTTGGGTATGGAATCATCTGTTGTAATTATAGATGATTCTGTGAGGGTCTGGCCTCATAACAAACTGAACTTGATAGTGGTGGAAAGGTATACATACTTCCCCTGTAGTAGACGTCAGTTTGGACTGCCTGGCCCTTCCCTTCTTGAGATTGATCATGATGAGAGACCTGAAGCTGGAACTCTGGCATCCTCTTTGGCAGTTATTGAGAAAATACACCAAATCTTTTTTGCCTCTCAATCCTTAGAAGAAGTGGATGTCAGAAATATACTTGCATCAGAACAGAGAAAAATCTTAGCTGGTTGTCGCATAGTATTTAGCAGGGTATTTCCTGTTGGTGAAGCAAATCCTCACCTTCATCCATTGTGGCAGACAGCTGAACAATTTGGTGCTGTTTGCACCAACCAGATTGATGAACAGGTTACTCACGTAGTTGCAAATTCCCCTGGGACTGATAAGGTGAATTGGGCTCTTAACAACGGAAGATTTGTTGTCCATCCTGGCTGGGTGGAAGCATCAGCATTGCTGTATAGGAGGGCGAATGAGCAAGATTTTGCCATTAAACCTTAA

Predicted protein sequences of Glyma08g28920

Limit To All Plant Sequences

>Glyma08g28920.1   sequence type=predicted peptide   gene model=Glyma08g28920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVFGSLLDCEVLGKLEKMGKEAEDVEEGEISDTASVEEISAEDFNKQDVKLLNNNNKPNGSDARVWAVHDLYSKYPTICRGYASGLYNLAWAQAVQNKPLNDIFVMEVDSDANANSNRNSSHRLASVAVNPKDVVVVDVDKEEGELEEGEIDADAEPEGEAESVVVAVSDSEKLDDVKMDVSDSEQLGARGVLEGVTVANVVESFAQTCSKLQNTLPEVLSRPAGSEKDDLVRLSFNATEVVYSVFCSMDSSEKEQNKDSILRLLSFVKDQQQAQLFSPEHVKEIQGMMTAIDSVGALVNSEAIGKEKELQTTEIKTQENSAVEVQIHEIKTQENQAVEAAELISYSKPLHRDITGTSQALKFGQNSIKGRGVLLPLLDLHKDHDADSLPSPTREAPSCFPVNKLLSVGESMVRSGSASAKMELDSEGSKFHLYETDALKAVSTYQQKFGRSSLFTNDKFPSPTPSGDCEDEVVDTNEEVSSASTGDFLTSTKPTLLDQPPVSATSMDRSSMHGFISSRVDATGPGSFPVKSSAKNRDPRLRFINSDASAVDNLSTLINNMSKVEYSGTTISRKQKAAEEPSLDVTVSKRLKSSLENTEHNMSEVRTGSGGWLEENTGPGAQLIERNHLMDKFGPEAKKTLNTVSSSCTGSDNFNATSIRNEQAPITASNVLASLPALLKEASVNPIMLVNILRLAEAQKKSADSAAIMLLHPTSSNPAMGTDSTASIGSSMATGLLQSSVGMLPVSSQSTSTAQTLQDDSGKIRMKPRDPRRILHTNNTIQKSGDLGNEQFKAIVSPVSNNQRTGDNVNAPKLEGRVDNKLVPTQSSAQPDIARQFTRNLKNIADIMSVSQESSTHTPVSQNFSSASVPLTSDRGEQKSVVSSSQNLQADMASAHETAASVTSRSQSTWGDVEHLFEGYDEQQKAAIQRERARRIEEQNKMFAARKLCLVLDLDHTLLNSAKFVEVDPLHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDTDSVDGEERVPKSKDLEGVLGMESSVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRRQFGLPGPSLLEIDHDERPEAGTLASSLAVIEKIHQIFFASQSLEEVDVRNILASEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTNQIDEQVTHVVANSPGTDKVNWALNNGRFVVHPGWVEASALLYRRANEQDFAIKP*

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