Report for Sequence Feature Glyma08g28860
Feature Type: gene_model
Chromosome: Gm08
Start: 23197277
stop: 23204255
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g28860
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G07290 AT
Annotation by Michelle Graham. TAIR10: MEI2-like 4 | chr5:2294248-2298491 FORWARD LENGTH=907
SoyBase E_val: 4.00E-112 ISS
GO:0045836 GO-bp
Annotation by Michelle Graham. GO Biological Process: positive regulation of meiosis
SoyBase N/A ISS
GO:0045927 GO-bp
Annotation by Michelle Graham. GO Biological Process: positive regulation of growth
SoyBase N/A ISS
GO:0048507 GO-bp
Annotation by Michelle Graham. GO Biological Process: meristem development
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0000166 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleotide binding
SoyBase N/A ISS
GO:0003676 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding
SoyBase N/A ISS
GO:0003723 GO-mf
Annotation by Michelle Graham. GO Molecular Function: RNA binding
SoyBase N/A ISS
PTHR24012 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24012:SF265 Panther
JGI ISS
PF04059 PFAM
RNA recognition motif 2
JGI ISS
UniRef100_G7KSW2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Terminal ear1-like protein n=1 Tax=Medicago truncatula RepID=G7KSW2_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1KWR1 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KWR1_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g28860
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma08g28860
Paralog Evidence Comments
Glyma18g51690 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g28860 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g257400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g28860
Coding sequences of Glyma08g28860
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g28860.2 sequence type=CDS gene model=Glyma08g28860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCCTTCTGAGACAATTGACTTCAAGAGTTTTTCTTCATCGTTGTATTCTTCTGAAGATATTTGTTCTTCTAAGGAGAGACAGGCTAGCTTATGGAAATCAGATAACATGCCCAATTGCTATGATTTTGATCAAGGAATAAAAACTAGCTTGAATGTACAATCATTATCCCATTTATCAGATAGTAGCAAAGTCAATGTAGTTGCTACTCAGCATGAGAGTAGTCTCTTTTCAAGTTCTTTGTCGGAGTTGTTTAGCAGGAAATTGAGATTATCTGCAAATAATGCTTTATATGGACATTCAGTTGACACTGTTGCATCCCACTATGAGGAAGAGAGACTTTTTGACTCTCTTGAAGAACTCGAGGCTCAAATTATTGGAAATCTACTCCCCAGTGATGATGATTTGCTTTCTGGAGTCACTAATGGGCTCGACCACATCATCCAAGACAGCTCTGGTGATGACACGGATGAACTAGACCTTTTCAGTAGTGTTGGAGGGATGGATTTAGGACATGATAATTGTTCATCTTCTGAACAAAAGAATTCTGAAATCCTTGATGAAGCTTGTAACAGTCAACTAGGGCTGCGTAGTGCCTCGATTGCTGGAGAACAGCCTTACAGTGAACACCCTTCTAGAACAATAGTTGTGAGAAACATTAATAGTCAACACAAAGAAAGTAATGTTTATCTGCATCAAAACAGCCTTCCTCTAAAGTCACCAACTAGCTTCCCGGGTTTGCATGGGATTTCTAAATCTGGTAAGCTGGATGGTGGAAGAGTTCTTGGTGTTGAGCCTGCCATATGCACACCATCCCCGGAAACTGCTTTTTTTCATGGGGTCTCTTCAAGTGTTCCTAACTCCTTACCATCACTAGTCAGAGTTAAATCAGCTGACAACAGATGTGAAGTTACTGAATCTGGTTCACCTGGCCAGTTGAATTTTGATAGTCAAGCTGCTCCAGCTTTTCATCCCCATTCCCTTCCAGAATTTCATGATGGTTTAGCTAACAGTGTTCATCATATTCCTCCCGAGGTGGCAGCAAACATCAATCTCAAAACACAGGAAAGAATAGATAACATGCAGTTCTGTCAAGTAAACTCCAATGGGCGCTTCATGGAATTCAATGAATGTGTTTTTAAATCCTCTGGTAATGGAAGCTGTCCTCTTCCTGGTCATCATTACAAATGGGGAAACTCCTATCAGCCTCCTGGAATGATGTGGCCAAATTCACCTTCGTATATTGATGGAGTTTGTGCAGCCACTAATCTGCCAAGATTGCATGGACTTCCTAGGTCACCATCACATATGATGGCCACTGTTTTACCCATAAATGGCCAGCATGTGCCTTCAGCTCCTTTTTGGGACAGAAGACATACCTATGCAGGGGAATCTCTTGGGAATATGCAATTTTCCGGTAACACAGCAGCACACTGTGTTGATTTTGTTTCTTATAATATCTTTCCACATTTTGGAGGAAATTGTGTTGACCTTAGAGTCCTACCCAAGAATCTTGGAGTCCATTTTCATAACCAAGGGGACCTAATGTTTCCCAGAAGAAACCACATGATTAATTCATTTGAGACTCACAAACAACGTACCAGAAGCCGCAGAAATGAAGGTTTGCCAAACTTGGATGACAAGAAACAGTATGAACTTGATATTGACCGCATAAAGAAGGGAGAAGATAACCGAACAACACTAATGATAAAGAACATTCCTAACAAGTATACATCCAAGATGCTGTTAGCTGCAATTGATGAACGCCATAGAGGAACTTATGATTTTGTTTATCTGCCAATTGATTTCAGAAACAAATGCAATGTGGGATATGCATTCATCAACATGATCAATCCTGGCTTGATTATACCATTCTATCAGGTGTTCGATGGGAAGAAATGGGAGAAATTCAACAGTGAGAAAGTGGCATCACTAGCATATGCTCGTATACAAGGGAAAGCAGCTCTCATTGCTCACTTCCAAAATTCAAGCTTGATGAATGAGGATAAGCGCTGCAGGCCTATCCTCTTCAACACCGATGGCCCTAATGCCGGTGACCAGGTTCCTTTCCCAGTTGGCATTAACATTCGCAACAAAGCTGGAAGAGTGAGAAACAACACTCAGGAGGATAACCTGCAAGGGAGTCGGAGTCTGCCTAATTTGGGAATCAGTAAGCTCTCATCTGATGGAGACAGTCATTCATTGGAGTCAGACTAA
Predicted protein sequences of Glyma08g28860
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g28860.2 sequence type=predicted peptide gene model=Glyma08g28860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MPSETIDFKSFSSSLYSSEDICSSKERQASLWKSDNMPNCYDFDQGIKTSLNVQSLSHLSDSSKVNVVATQHESSLFSSSLSELFSRKLRLSANNALYGHSVDTVASHYEEERLFDSLEELEAQIIGNLLPSDDDLLSGVTNGLDHIIQDSSGDDTDELDLFSSVGGMDLGHDNCSSSEQKNSEILDEACNSQLGLRSASIAGEQPYSEHPSRTIVVRNINSQHKESNVYLHQNSLPLKSPTSFPGLHGISKSGKLDGGRVLGVEPAICTPSPETAFFHGVSSSVPNSLPSLVRVKSADNRCEVTESGSPGQLNFDSQAAPAFHPHSLPEFHDGLANSVHHIPPEVAANINLKTQERIDNMQFCQVNSNGRFMEFNECVFKSSGNGSCPLPGHHYKWGNSYQPPGMMWPNSPSYIDGVCAATNLPRLHGLPRSPSHMMATVLPINGQHVPSAPFWDRRHTYAGESLGNMQFSGNTAAHCVDFVSYNIFPHFGGNCVDLRVLPKNLGVHFHNQGDLMFPRRNHMINSFETHKQRTRSRRNEGLPNLDDKKQYELDIDRIKKGEDNRTTLMIKNIPNKYTSKMLLAAIDERHRGTYDFVYLPIDFRNKCNVGYAFINMINPGLIIPFYQVFDGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFNTDGPNAGDQVPFPVGINIRNKAGRVRNNTQEDNLQGSRSLPNLGISKLSSDGDSHSLESD*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
