Glyma08g28770 - SoyBase

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Report for Sequence Feature Glyma08g28770

Feature Type:	gene_model
Chromosome:	Gm08
Start:	23147742
stop:	23153090
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g28770

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G16030	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr5:5238242-5240578 FORWARD LENGTH=339	SoyBase	E_val: 6.00E-67	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR24619	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24619:SF141	Panther		JGI		ISS
UniRef100_D9ZBM6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: LuxR family transcriptional regulator (Fragment) n=1 Tax=Schiedea globosa RepID=D9ZBM6_9CARY	SoyBase	E_val: 2.00E-65	ISS
UniRef100_I1KWQ4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KWQ4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g28770

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g28770

Paralog	Evidence	Comments
Glyma18g51626	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g28770 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g256900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g28770

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g28770

Limit To All Plant Sequences

>Glyma08g28770.1   sequence type=CDS   gene model=Glyma08g28770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCAACAGCTGAACCACTTCCTTATAGCTCAAGAAGAAGAGATGAGTCAGAGTTCAATTTGAGAGAATGGGCAGTGAAAGCTAGAATCCGCCGAGAGAACACCAACTCTAGAAGGTACTCAGGATCTTACATGAGAAGCTTTAGAGAAGACACAAGGTCATTTAGATCAAACATAACCATTTCTAGCACTGCTTCTTCACCCGGATACCCCTTAAAAGATGATATAGACCCTTCAACATATTCTTTCACAACTGCTCTTAAAGCATTGCAAGCAAGGGCAGGCTATAACAGGTGGGGATGCTTATCTCCAGATGGTTTTGCTTTAAATTCCAAGTGGAATGAAGCAGAAAGGTATATATGCAACCCTCTCTCAGGGGAGGTACCATTGGAGTGTTTATCTGCAAAAACTCTTAGTGGAAGATCTTTTAGAAACTCAATAAACAGAATTGCCATGTCTGCTCCTCTAGTTTATTCCTCAAAGCACATTCCAACAAAGCCAGCAACTTACATACAAGAAGAAGTGGCTCTTCAATTTCCCAATCCAGAAAAGAAGAAAGAGGGAATCACAAGAGATGTTGGTACTCAAAGCACACCCCCTTATCTTAGTTCAACCAGTCCCAGCCCTGCTTCAACTCCATCCATCACAGAGAGATCAAAACCTCGAATTTCTGACTCCCTTAACTTAAATGCAAAAACAACAAATTCCGACGAAGAGGTGGAAGAGAAAGATGAAGAAACATGGGAGACAAGAGAAACAAAAAGAGAAAAGAAGGTGTGGAGGAAGAAAGAGGAGCAACTTTGCAAACAAAGTGGGTGCTTTTCGTGGATGAGAAAAAAAAAGGGAGAAAGAGAAAAAGAAAGACAAAGAAGGAATAACATCTTTCTCACTCACTTCAAAGCTGGCAAAAGATAA

Predicted protein sequences of Glyma08g28770

Limit To All Plant Sequences

>Glyma08g28770.1   sequence type=predicted peptide   gene model=Glyma08g28770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASTAEPLPYSSRRRDESEFNLREWAVKARIRRENTNSRRYSGSYMRSFREDTRSFRSNITISSTASSPGYPLKDDIDPSTYSFTTALKALQARAGYNRWGCLSPDGFALNSKWNEAERYICNPLSGEVPLECLSAKTLSGRSFRNSINRIAMSAPLVYSSKHIPTKPATYIQEEVALQFPNPEKKKEGITRDVGTQSTPPYLSSTSPSPASTPSITERSKPRISDSLNLNAKTTNSDEEVEEKDEETWETRETKREKKVWRKKEEQLCKQSGCFSWMRKKKGEREKERQRRNNIFLTHFKAGKR*

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