Glyma08g28750 - SoyBase

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Report for Sequence Feature Glyma08g28750

Feature Type:	gene_model
Chromosome:	Gm08
Start:	23126564
stop:	23128323
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g28750

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G13280	AT	Annotation by Michelle Graham. TAIR10: allene oxide cyclase 4 \| chr1:4547624-4548552 FORWARD LENGTH=254	SoyBase	E_val: 7.00E-79	ISS
GO:0009695	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016853	GO-mf	Annotation by Michelle Graham. GO Molecular Function: isomerase activity	SoyBase	N/A	ISS
GO:0046423	GO-mf	Annotation by Michelle Graham. GO Molecular Function: allene-oxide cyclase activity	SoyBase	N/A	ISS
PF06351	PFAM	Allene oxide cyclase	JGI		ISS
UniRef100_F6KBT5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Allene oxide cyclase 5 n=1 Tax=Glycine max RepID=F6KBT5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1KWQ3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KWQ3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g28750

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g28750

Paralog	Evidence	Comments
Glyma18g51600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g28750 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g256600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g28750

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g28750

Limit To All Plant Sequences

>Glyma08g28750.1   sequence type=CDS   gene model=Glyma08g28750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACCTACTGGAGCCATGCTTTGAAAACCATCCCTTCTTCCTTCGTGAAACCAGTTACTGTTAGTGCCAAAACAACATCATTATACCTCACACCCTCAATTACCAAACCTTTCTTACCCTTCACCTCATCAAACCACTCTCTCACCGAAAACCTTAAGCTGAACTCCACTTTGCCACACTTTTGCTTGTCTTCAGTCCCCAAGAAATCTTTCACTTGTAGAAGCCAGGCTGAGCCTGTTGACTCTGAAAAAGTCCAAGAATTGACTGTGTATGAGATCAACGAGCGTGACCGTGGAAGCCCTGTTTATCTTCGATTGAGCTATAAAAGTGTCAATTCCCTAGGTGATTTAGTCCCCTTTAGCAACAAGTTGTACACTGGGGATTTGCAAAAGCGCATTGGGATAACATCTGGTATCTGTATTTTGATCCAAAACAAAGCTGAGAAGAAAGGGGATAGGTATGAAGCAATCTTCAGCTTCTACTTTGGAGACTATGGTCACATAGCAGTGCAGGGACCTTACCTGACCTATGAGGACTCATATTTGGCTGTGACTGGTGGGTCTGGCATATTTGAGGGTGTTAAAGGTCAAGTGAAGCTGCATCAGATTGTGTATCCTTTTAAGATTTTGTACACATTTTATCTAAAGGGTATCAAGGATTTGCCTCAGGAGCTTCTTGTCAAGACTGTTGAGCCAATTCCATCTGTTGAACCTTCCCCTGCTGCTAAGGCCCTTGAGCCAAATGCTACCATTGCTGGCTTCACCGACTAA

Predicted protein sequences of Glyma08g28750

Limit To All Plant Sequences

>Glyma08g28750.1   sequence type=predicted peptide   gene model=Glyma08g28750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATYWSHALKTIPSSFVKPVTVSAKTTSLYLTPSITKPFLPFTSSNHSLTENLKLNSTLPHFCLSSVPKKSFTCRSQAEPVDSEKVQELTVYEINERDRGSPVYLRLSYKSVNSLGDLVPFSNKLYTGDLQKRIGITSGICILIQNKAEKKGDRYEAIFSFYFGDYGHIAVQGPYLTYEDSYLAVTGGSGIFEGVKGQVKLHQIVYPFKILYTFYLKGIKDLPQELLVKTVEPIPSVEPSPAAKALEPNATIAGFTD*

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