Glyma08g28560 - SoyBase

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Report for Sequence Feature Glyma08g28560

Feature Type:	gene_model
Chromosome:	Gm08
Start:	22876499
stop:	22882406
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g28560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G67170	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 5478 Blast hits to 4354 proteins in 533 species: Archae - 87; Bacteria - 653; Metazoa - 2554; Fungi - 380; Plants - 418; Viruses - 16; Other Eukaryotes - 1370 (source: NCBI BLink). \| chr1:25127727-25129145 FORWARD LENGTH=359	SoyBase	E_val: 2.00E-101	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_G9I822	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Structural maintenance of chromosomes domain-containing protein n=1 Tax=Citrus sinensis RepID=G9I822_CITSI	SoyBase	E_val: 1.00E-41	ISS
UniRef100_I1KWP5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KWP5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g28560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g28560

Paralog	Evidence	Comments
Glyma18g51461	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g28560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma08g28560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g28560

Limit To All Plant Sequences

>Glyma08g28560.1   sequence type=CDS   gene model=Glyma08g28560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGCAAAGGCCGCATGCCGCCGCCCCCTCACCTACGGCGCCCGCACCCGCCGGGCCCCGCCGCGATGCCGCATCCGCTCGCGGGGCCGTTCGATCTGCTCCCGCCGCCGCAGGTGATGGAGCAGAAGCTGGCGTCGCAGCACGCGGAGATGCAGCGCTTGGCCACGGAGAACCAGCGCCTGGCTGCGACGCACGGCGTGCTGCGGCAGGAGCTGGCGGCGGCGCAGCACGAGCTGCAGATGCTGCACGCGCACGTGTCGGCGCTTAAGGGGGAACGGGAGCAGCAGATACGCGTGCAGCTGGAGAAGATTTCGAAGATGGAGGCCGAGGCGAAGGGCGCGGAGAGCGTGAAGATGGAGCTGCAGCAGGCGCGTGGGGAGGCGCAGAACCTTGTTGTGTCGAGGGATGAACTTGTTTCCAAAGCGCAGCACTTGACTCAGGAGCTTCAGAGGGTCCATGCTGATGCTGTTCAGATTCCTGCTCTTATCTCGGAGCTTGAATGCCTCAGACAGGAGTATCAACATTGCAGGGCCACTTTTGACTATGAAAAAAAATTATACAATGATCACCTTGAGTCACTTCAGGTGATGGAAAAGAACTATGTTTCTATGAGTAGGGAAGTGGAAAAACTTCGAGCAGAGCTTACAAACACCGCTAATGTGGATCGGAGAAGTAGTGGGCCATATGGTGGCACCTCTGGAACTAATGAGAATGAGGCTTCTGGTCTTCCCGTGGGACAAAATGCATATGAAGATGGTTATTCGTTTATGCAGGGACGAGGTCCCCTCCCTGCAGCCAGTGGTGGTGGTGGCAATGCTACTACACTTATTACTGCCGGAGGTCAACCTGGTCCAGCTCCTGCAGGAACTGGTTATGATGCTCCCAGAGGGCCTGGGTATGGTGCATCTGCAGGGCCCGCTTATGATGCACAAAGGGTTGCTACTTACGATGCTCAGAGGTTGACTGGTTATGATGCATTTAGAGGGTCTGCTTATGATTCCAAGAGAGGGCCAATTTTTGATGCTCAAAGAACTGGCTATGATCCACAGAGAGGTCCGGGTTATGATATGCAGAGAGGACCTGCTTATGATGCACCGAGAGCTGATGGCTATGATGCACAGTCAAGAGGGGCTGCTGGTCCTCATGGACATGCTCCGCCAATGAACAATATGCCTTATGGATCCACAACTCCGCCTGCTCGTAGTGGAGGTGGATACGAAGCTGCTCGCGGTGTAAACCCTGCTAGGAGATGA

Predicted protein sequences of Glyma08g28560

Limit To All Plant Sequences

>Glyma08g28560.1   sequence type=predicted peptide   gene model=Glyma08g28560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSKGRMPPPPHLRRPHPPGPAAMPHPLAGPFDLLPPPQVMEQKLASQHAEMQRLATENQRLAATHGVLRQELAAAQHELQMLHAHVSALKGEREQQIRVQLEKISKMEAEAKGAESVKMELQQARGEAQNLVVSRDELVSKAQHLTQELQRVHADAVQIPALISELECLRQEYQHCRATFDYEKKLYNDHLESLQVMEKNYVSMSREVEKLRAELTNTANVDRRSSGPYGGTSGTNENEASGLPVGQNAYEDGYSFMQGRGPLPAASGGGGNATTLITAGGQPGPAPAGTGYDAPRGPGYGASAGPAYDAQRVATYDAQRLTGYDAFRGSAYDSKRGPIFDAQRTGYDPQRGPGYDMQRGPAYDAPRADGYDAQSRGAAGPHGHAPPMNNMPYGSTTPPARSGGGYEAARGVNPARR*

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