Glyma08g28530 - SoyBase

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Report for Sequence Feature Glyma08g28530

Feature Type:	gene_model
Chromosome:	Gm08
Start:	22857934
stop:	22862655
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g28530

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G30841	AT	Annotation by Michelle Graham. TAIR10: Cofactor-independent phosphoglycerate mutase \| chr3:12591595-12593401 FORWARD LENGTH=495	SoyBase	E_val: 0	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
PTHR12510	Panther	TROPONIN C-AKIN-1 PROTEIN	JGI		ISS
PTHR12510:SF2	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01676	PFAM	Metalloenzyme superfamily	JGI		ISS
PF10143	PFAM	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	JGI		ISS
UniRef100_I1KWP3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KWP3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9LHK9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cofactor-independent phosphoglycerate mutase n=1 Tax=Arabidopsis thaliana RepID=Q9LHK9_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g28530

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g28530

Paralog	Evidence	Comments
Glyma18g51440	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g28530 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma08g28530

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g28530

Limit To All Plant Sequences

>Glyma08g28530.1   sequence type=CDS   gene model=Glyma08g28530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATAGTACACAGGTGCCAAAGAAAAGAGTGGCATTTGTGCTGATTGATGGATTGGCTGATGTGTCACTGCCAAAGCTTGGATACAAGACTCCTCTTCAGGCAGCAAAACTGCCCAACTTGGATGCCATAGCATCTGCTGGAGTTAATGGACTAATGGACCCTGTTGAGGTTGGCTTAGCTTGTGGAAGTGACACTGCTCATCTTTCCTTGTTGGGTTATGATCCTAGGGTTTATTATCGCGGCCGAGGAGCATTTGAATCCATGGGGGCTGGATTGGCCATGTCACCTGGTGATATTGCTTTTAAGTCAAACTTTGCAACTCTCGATGAGAAAACTGGAATAGTCACCAGTAGGAGAGCTGACAGGCACTTTGAAGAAGAAGGCCCCATCCTTTGTGCTGCCCTAGATGGATTGAAGCTGCCATCTTTCCCTCAATATGAAGTCAGAGTCAGGTATGCAACAGAACATAGATGTGGAGTAGTTGTTAAAGGACCAAATCTGAGTGGAAATATATCAGGAACAGACCCATTGAAGGACAACCGCTTACTTTTGAAAGCAGAAGCTTTAGATGATTCTCATGAAGCAAGGAACACTGCCGCTGTTGTTAATGAGTTGTCCAAGGAAATAACAAAAATTTTGGTTTCTCATCCTGTGAATGCTAAACGTGCTGCAAAAGGGAAGAACATAGCAAATGTAGTCCTTTTAAGAGGCTGTGGCATTCGAATTGAGGTTACCCCATTTTTAAATAGACATGGTTTGTGGCCATGCATGGTAGCTCCAACGAAAATAATTGCTGGCCTGGGCTTATCACTTGGTATTGATATTCTAGATGCTCCTGGAGCAACTGGGGACTATCGAACTTTACTAACATCAAAAGCATCGGCAATATCTAAGGCACTCTCAGCTCCTTTACAGTCCTGTCCCAGAGTTTTTGTACCTGGAGAGGATGAGCTTAAAGCAGGCCGGTCAGATGGCTATGACTTTGGATTTCTTCATATTAAGGCAATAGATGATGCTGGCCATGACAAAGCAAGCATCCTCAAAGTCAAAGCATTAGAAGCTGTAGATAAAGCCTTGGGACAGCTGGCAAGGCTTCTATGGGAAGCAGAATCAACAGGAAAATTTCAGTTTTTCCTTTGTGTCACAGGAGATCACTCTACTCCAGTAGAATATGGAGATCATAGCTTTGAATCGGTCCCGTTCGCAATTTGCCGGTTGAAAGACTTTGTTGGTGCAATTGGGGAATCCACTATTTCCAAATCTTCTCTTGACCCATTTCCTATTCCAAGTGTTAAGTCGGGTGAAGACTTGCTTGATGATCTGGAAACAGAAGAGAGAGACAAATGCTGTGAAGCTTATAGTGGTGATTCGGTTTATGAGCTGAATGAAGTGGCAGCTGCAAAGGGATGTCTGGGGCGTTTCCCTGGGGGAGAAATGATGGGAATTATAAAGAAATTCATTAACTTAGATGCGGGAACTGATTAA

Predicted protein sequences of Glyma08g28530

Limit To All Plant Sequences

>Glyma08g28530.1   sequence type=predicted peptide   gene model=Glyma08g28530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNSTQVPKKRVAFVLIDGLADVSLPKLGYKTPLQAAKLPNLDAIASAGVNGLMDPVEVGLACGSDTAHLSLLGYDPRVYYRGRGAFESMGAGLAMSPGDIAFKSNFATLDEKTGIVTSRRADRHFEEEGPILCAALDGLKLPSFPQYEVRVRYATEHRCGVVVKGPNLSGNISGTDPLKDNRLLLKAEALDDSHEARNTAAVVNELSKEITKILVSHPVNAKRAAKGKNIANVVLLRGCGIRIEVTPFLNRHGLWPCMVAPTKIIAGLGLSLGIDILDAPGATGDYRTLLTSKASAISKALSAPLQSCPRVFVPGEDELKAGRSDGYDFGFLHIKAIDDAGHDKASILKVKALEAVDKALGQLARLLWEAESTGKFQFFLCVTGDHSTPVEYGDHSFESVPFAICRLKDFVGAIGESTISKSSLDPFPIPSVKSGEDLLDDLETEERDKCCEAYSGDSVYELNEVAAAKGCLGRFPGGEMMGIIKKFINLDAGTD*

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