Glyma08g28515 - SoyBase

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Report for Sequence Feature Glyma08g28515

Feature Type:	gene_model
Chromosome:	Gm08
Start:	22855411
stop:	22856120
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g28515

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G38760	AT	Annotation by Michelle Graham. TAIR10: Late embryogenesis abundant protein (LEA) family protein \| chr5:15524249-15524743 FORWARD LENGTH=67	SoyBase	E_val: 5.00E-21	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0019953	GO-bp	Annotation by Michelle Graham. GO Biological Process: sexual reproduction	SoyBase	N/A	ISS
GO:0048445	GO-bp	Annotation by Michelle Graham. GO Biological Process: carpel morphogenesis	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_Q9ZPA7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ABA-inducible protein n=1 Tax=Fagus sylvatica RepID=Q9ZPA7_FAGSY	SoyBase	E_val: 1.00E-19	ISS
UniRef100_UPI0002338110	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338110 related cluster n=1 Tax=unknown RepID=UPI0002338110	SoyBase	E_val: 5.00E-34	ISS

Expression Patterns of Glyma08g28515

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g28515 not represented in the dataset	Glyma08g28515 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g28515

Paralog	Evidence	Comments
Glyma18g51431	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g28515 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma08g28515

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g28515

Limit To All Plant Sequences

>Glyma08g28515.1   sequence type=CDS   gene model=Glyma08g28515   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCGATCCCAGAATGCGAGCCATCAAGCTGGCCAAGCCATGGGACAGGCTCAGGAGAAGGCAAGCAACATGATGAACAGTGCAGGCAATGCTGCTCAATCTGCCAAAGAATCCTGCCAAGAGGCTGGCCAGCAAATGCAGCAAAAGGCACAAGGGGCTGCTGATGCTGCCAAGAATGCAGTTGGGGCTAACAAATGA

Predicted protein sequences of Glyma08g28515

Limit To All Plant Sequences

>Glyma08g28515.1   sequence type=predicted peptide   gene model=Glyma08g28515   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDRSQNASHQAGQAMGQAQEKASNMMNSAGNAAQSAKESCQEAGQQMQQKAQGAADAAKNAVGANK*

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