Glyma08g28460 - SoyBase

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Report for Sequence Feature Glyma08g28460

Feature Type:	gene_model
Chromosome:	Gm08
Start:	22810456
stop:	22812552
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g28460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G38710	AT	Annotation by Michelle Graham. TAIR10: Methylenetetrahydrofolate reductase family protein \| chr5:15501340-15503899 FORWARD LENGTH=476	SoyBase	E_val: 0	ISS
GO:0006537	GO-bp	Annotation by Michelle Graham. GO Biological Process: glutamate biosynthetic process	SoyBase	N/A	ISS
GO:0006562	GO-bp	Annotation by Michelle Graham. GO Biological Process: proline catabolic process	SoyBase	N/A	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0006970	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to osmotic stress	SoyBase	N/A	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009620	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fungus	SoyBase	N/A	ISS
GO:0009695	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process	SoyBase	N/A	ISS
GO:0009753	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus	SoyBase	N/A	ISS
GO:0009863	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009867	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0010583	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0004657	GO-mf	Annotation by Michelle Graham. GO Molecular Function: proline dehydrogenase activity	SoyBase	N/A	ISS
KOG0186	KOG	Proline oxidase	JGI		ISS
PTHR13914	Panther	PROLINE OXIDASE	JGI		ISS
PF01619	PFAM	Proline dehydrogenase	JGI		ISS
UniRef100_I1KWN9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KWN9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q6JA03	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Proline dehydrogenase n=2 Tax=Medicago sativa RepID=Q6JA03_MEDSA	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g28460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g28460

Paralog	Evidence	Comments
Glyma18g51400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g28460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g255900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g28460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g28460

Limit To All Plant Sequences

>Glyma08g28460.1   sequence type=CDS   gene model=Glyma08g28460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACTCGTGTTATCCCACCAAGAATCCTAAGGAAGCTTCGCTACAACACCGCCACAAAACCCCTCAACTCCTCTCACCCTCCTCTCTCCCCGTCTCTCTCTCCTTCTCCCTGCCTCCTACCTGCTCCGCTGCCGTCCCCCGCCGTGCTCCGTCCCTCCGCCGCCGCCTCCGACGACCTCAGCTTCCGCGACGTCGAAAAGCTCTTCTCCTCTGTCTCCACCACCAGCCTCCTCCGCTCCTCCGCCGTGCTGCACGCCACCGCCGTCGAGCCCATGGTTGACTTCGGCACATGGCTCTTGCGATCAAATCTCATGCACGTGCATGGCATCCGCGACCTCATCCTCGCCACCGTCCGCAACACCTTCTTCGACCACTTTTGCGCCGGCGAGGACGCCATCACCACCGCTGCCAGCATCCGCCACCTAAACCGTGCCGGCCTCCGCGGCATGCTCGTCTACGGCGTCGAAGACGCAAACGACAACGACGCCTGCCACCGCAACTTCAAGGGCTTTCTTCACACCATCGACGTCAGCAGATCGCTTCCCCCTTCTTCGGTGAGCTTTGTGATAGTGAAAATCACCGCAATATGTCCTATGAGCCTGTTGGAACGAATGAGTGACCTTCTTAGATGGCAACACAAGGACCCTTGTTTCAGTTTGCCATGGAAGCAAGATTGCTTCCCCATATTCTCCGAGTCAAGCCCTTTGTACCACACAAGCAACAAACCCGAGCCTCTTACCCCAGAGGAAGAAAAAGACCTTCAACTTGCCATCCAGAGATTCCATGAGCTTTGCCATAAGTGTGTGCAAGTCAACATTCCTTTGTTGGTTGATGCAGAACACACTTCTGTTCAACCTGCTATTGACTACTTCACATACTCCTCTGCCATCTTGCACAACAAAGGTGACAACCCCATTGTGTTTGGGACCATGCAGACCTACCTCAAGGATGCCAAGGAGAGACTCTTGCTGGCTGCAGAGGCTGCAGACAACATGGGAATCCCAATGGGCTTCAAACTTGTCAGGGGTGCTTATATGTCAAGTGAAACAAAATTGGCTGAGTCTTTGGGCTATTCTTCCCCAATTCACGACACCATCGAGGACACACACAAGTGCTTCAATGACTGCTCCTCTTTCATGCTTGAGAAGGTTGCTAATGGCCCTGGTGGACTTGTTCTTGCAACTCATAATGTTGAGTCAGGGAAACTGGCTGCTGCAAAAGCACATGAGCTAGGGATTGGAAAGGTGAACCACAAGCTTGAATTTGCACAGCTGCATGGAATGTCAGAGGCACTTTCCTTTGGTTTGAGCAATGCAGGATTTCAGGTGAGCAAGTATATGCCATTTGGACCAGTGGAGACTGTTATGCCATATCTCCTAAGAAGGGCTGAAGAGAATAGAGGAATGTTGGCTGCTTCGGGCTTTGACAGGCAACTGATGAGGAAGGAGTTGGGAAGGAGACTAAAAGCTGCTGTCTTTTAA

Predicted protein sequences of Glyma08g28460

Limit To All Plant Sequences

>Glyma08g28460.1   sequence type=predicted peptide   gene model=Glyma08g28460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATRVIPPRILRKLRYNTATKPLNSSHPPLSPSLSPSPCLLPAPLPSPAVLRPSAAASDDLSFRDVEKLFSSVSTTSLLRSSAVLHATAVEPMVDFGTWLLRSNLMHVHGIRDLILATVRNTFFDHFCAGEDAITTAASIRHLNRAGLRGMLVYGVEDANDNDACHRNFKGFLHTIDVSRSLPPSSVSFVIVKITAICPMSLLERMSDLLRWQHKDPCFSLPWKQDCFPIFSESSPLYHTSNKPEPLTPEEEKDLQLAIQRFHELCHKCVQVNIPLLVDAEHTSVQPAIDYFTYSSAILHNKGDNPIVFGTMQTYLKDAKERLLLAAEAADNMGIPMGFKLVRGAYMSSETKLAESLGYSSPIHDTIEDTHKCFNDCSSFMLEKVANGPGGLVLATHNVESGKLAAAKAHELGIGKVNHKLEFAQLHGMSEALSFGLSNAGFQVSKYMPFGPVETVMPYLLRRAEENRGMLAASGFDRQLMRKELGRRLKAAVF*

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