Glyma08g28380 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g28380

Feature Type:	gene_model
Chromosome:	Gm08
Start:	22668716
stop:	22672970
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g28380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G16000	AT	Annotation by Michelle Graham. TAIR10: NSP-interacting kinase 1 \| chr5:5224264-5227003 FORWARD LENGTH=638	SoyBase	E_val: 0	ISS
GO:0000271	GO-bp	Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process	SoyBase	N/A	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0009736	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinin mediated signaling pathway	SoyBase	N/A	ISS
GO:0009825	GO-bp	Annotation by Michelle Graham. GO Biological Process: multidimensional cell growth	SoyBase	N/A	ISS
GO:0009932	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell tip growth	SoyBase	N/A	ISS
GO:0010075	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth	SoyBase	N/A	ISS
GO:0010817	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of hormone levels	SoyBase	N/A	ISS
GO:0043481	GO-bp	Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light	SoyBase	N/A	ISS
GO:0048767	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair elongation	SoyBase	N/A	ISS
GO:0051607	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to virus	SoyBase	N/A	ISS
GO:0071555	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall organization	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF423	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
PF00560	PFAM	Leucine Rich Repeat	JGI		ISS
PF08263	PFAM	Leucine rich repeat N-terminal domain	JGI		ISS
UniRef100_B9T3S1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1, putative n=1 Tax=Ricinus communis RepID=B9T3S1_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233810C	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233810C related cluster n=1 Tax=unknown RepID=UPI000233810C	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g28380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g28380

Paralog	Evidence	Comments
Glyma18g51330	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g28380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g255300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g28380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g28380

Limit To All Plant Sequences

>Glyma08g28380.1   sequence type=CDS   gene model=Glyma08g28380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGACTCCAAGAGGAATAGCTCTTCTCAGTTTCACATCCTTCTTGTTTTGGAGCTCAGCGAATGCTTTGCTTTCTCCTAAGGGAGTGAACTTTGAAGTGCAAGCTTTAATGGGCATAAAATATTCTCTAGAGGATCCACATGGTGTTCTAGATAATTGGGATGGGGATGCAGTTGATCCATGTAGCTGGACTATGGTCACATGTTCTTCTGAAAACTTGGTCATTGGACTGGGCACTCCTAGTCAAAGTTTATCTGGTACTCTATCTCCAAGCATAGGCAACTTAACCAACCTCCAGATTGTGCTTCTACAGAATAACAACATAAGTGGACCAATCCCTTCAGAGCTAGGCAAACTTCCTAAGCTTCAAACACTTGATCTCTCTAACAACTTCTTCAAAGGGGAGATTCCTCCCTCTCTTGGTCACCTGAGAAGCCTCCAATACCTGAGGCTCAATAATAACAGTCTTGTTGGTGAATGCCCAGAGTCACTGGCTAACATGACCCAGCTTAATTTTCTTGATTTGTCATACAATAATCTTAGTGACCCGGTGCCTAGAATTTTAGCCAAATCATTCAGCATTGTTGGAAACCCCCTTGTTTGTGCCACGGGAAAAGAGCCAAACTGCCATGGGATGACATTGATGCCTATGTCCATGAACTTAAACAACACTGAAGATGCTTTACAATCTGGCAGACCAAAAACTCATAAAATGGCAATTGCCTTTGGCTTGAGTTTGGGATGTCTTTGCCTCATAGTTATTGGTTTTGGACTTGTTCTTTGGTGGAGGCACAAACACAATCAACAAGCATTCTTTGATGTTAAAGACCGGCATCATGAAGAAGTCTACCTTGGAAACTTGAAGAGGTTCCAATTCAGAGAACTCCAGATTGCTACTAAAAACTTCAGCAGCAAAAACATACTGGGAAAAGGTGGTTTTGGAAATGTCTACAAAGGAATTCTCCCTGATGGCACTCTTGTAGCTGTCAAGAGGCTTAAAGATGGCAATGCCATTGGTGGAGAGATTCAATTTCAGACCGAAGTTGAAATGATCAGCCTGGCAGTGCACCGAAACCTCCTCAGACTGTATGGATTTTGCATGACACCATCGGAAAGGCTTTTGGTTTATCCATACATGTCCAATGGCAGTGTCGCTTCCCGTCTCAAGGGGAAGCCAGTGCTGGACTGGGGCACAAGGAAGCACATTGCTTTAGGAGCAGGAAGAGGACTACTTTACCTTCATGAGCAGTGTGATCCAAAGATAATCCATAGGGATGTGAAAGCTGCCAACATATTGCTTGATGACTATTATGAAGCTGTAGTTGGAGATTTTGGGTTGGCAAAGCTTTTGGATCACCAAGATTCACATGTCACTACTGCAGTGAGGGGCACTGTTGGCCATATTGCACCAGAATACCTATCCACAGGACAATCCTCTGAGAAGACTGATGTCTTTGGATTTGGCATTCTCCTCCTTGAATTGATCACAGGCCAAAGGGCTCTAGAGTTTGGAAAATCAGCTAACAACAAAGGAGCCATGCTTGATTGGGTAAAGAAAATTCATCAGGAGAAAAAGCTAGAAATGCTAGTAGACAAAGATCTCAAGAGCAACTATGACAGGATTGAGTTTGAGGAAATGGTTCAAGTGGCTCTATTGTGTACTCAATATCTTCCCGGTCATAGGCCTAAAATGTCGGAAGTGGTACGCATGCTTGAAGGTGATGGACTAGCAGAAAGATGGGAAGCTTCTCAAAGAGTTGACACAACAAAGTGCAAACCACAAGAGTCCTCTTCATCAGATAGGTATTCTGATCTCACTGATGACTCTTTGTTGTTAGTCCAAGCCATGGAGCTCTCAGGACCCAGGTGA

Predicted protein sequences of Glyma08g28380

Limit To All Plant Sequences

>Glyma08g28380.1   sequence type=predicted peptide   gene model=Glyma08g28380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTPRGIALLSFTSFLFWSSANALLSPKGVNFEVQALMGIKYSLEDPHGVLDNWDGDAVDPCSWTMVTCSSENLVIGLGTPSQSLSGTLSPSIGNLTNLQIVLLQNNNISGPIPSELGKLPKLQTLDLSNNFFKGEIPPSLGHLRSLQYLRLNNNSLVGECPESLANMTQLNFLDLSYNNLSDPVPRILAKSFSIVGNPLVCATGKEPNCHGMTLMPMSMNLNNTEDALQSGRPKTHKMAIAFGLSLGCLCLIVIGFGLVLWWRHKHNQQAFFDVKDRHHEEVYLGNLKRFQFRELQIATKNFSSKNILGKGGFGNVYKGILPDGTLVAVKRLKDGNAIGGEIQFQTEVEMISLAVHRNLLRLYGFCMTPSERLLVYPYMSNGSVASRLKGKPVLDWGTRKHIALGAGRGLLYLHEQCDPKIIHRDVKAANILLDDYYEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKSANNKGAMLDWVKKIHQEKKLEMLVDKDLKSNYDRIEFEEMVQVALLCTQYLPGHRPKMSEVVRMLEGDGLAERWEASQRVDTTKCKPQESSSSDRYSDLTDDSLLLVQAMELSGPR*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain