Glyma08g28320 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g28320

Feature Type:	gene_model
Chromosome:	Gm08
Start:	22609079
stop:	22613292
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g28320

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G15460	AT	Annotation by Michelle Graham. TAIR10: Ribosomal RNA processing Brix domain protein \| chr3:5214279-5216188 REVERSE LENGTH=315	SoyBase	E_val: 0	ISS
GO:0001510	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA methylation	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009220	GO-bp	Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2971	KOG	RNA-binding protein required for biogenesis of the ribosomal 60S subunit	JGI		ISS
PTHR13634	Panther	RIBOSOME BIOGENESIS PROTEIN BRIX	JGI		ISS
PF04427	PFAM	Brix domain	JGI		ISS
UniRef100_G7KSA6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ribosome biogenesis protein BRX1-like protein n=1 Tax=Medicago truncatula RepID=G7KSA6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KWN1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KWN1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g28320

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g28320

Paralog	Evidence	Comments
Glyma18g51310	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g28320 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g255000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g28320

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g28320

Limit To All Plant Sequences

>Glyma08g28320.2   sequence type=transcript   gene model=Glyma08g28320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGAAGAAGCCCAATAGATATAAACCCATCTTAACTGGTTAGGTTATTAAAGGGCCCGAGCCAACTTAACTCTTAGGGGAGGAGAAAAACCCTTAGCCGCCAGCATTCGTTGAACTCATTCTTCTTCAACTCAACAGAGCAAGGGTTCGCACTCGCAGATTCTTGAGCAAGAATAATGGGGAAGAAAAGAAAACACAGTGAGACTACTCAAGCTGTAGCACAACCCAAAAAGGAAGAGGCTGCTCCAGAGAGACCGGCTAGGACCCTTTTGGGGTGGAAGGATAAGAATCAAGTTGAGGATGATTCACCAATATTTAGGAACAAAGAGAAGCTATTGGTCACTTGCTCTAGGCGCATCAATTACAGGTACCGGCATTTGATGTTGAATTTGGTCACACTTTTGCCTCATTGTAAGAAGGATAACAAAGTTGAATCAAAGGAAACTAAAGGAGCCACCCTCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAGTGCAGGAAGCATAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAATGGCCCATCTGTAAAGTTTCTAGTTAGTGCCGTTCACACAATGGAGGAATTGAAGCTAACGGGAAATCACCTACAAGGTTCGCGTCCAATTTTGACATTTTCAGCAAATTTTGAAAAAGATGCACATTGGAAACTATTAAAGGAGATGTTGTTACAGATATTTGAAACACCAAAGGACCACAGAAAGGCCAAGCCTTTCCATGATCACGTTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTCCGGAATTATCAGATCTCTGCTCATCATAATGAGTCGGACAAATTACCTAGAGGTGGCCTTGATAAAATGACATTGATTGAGGTTGGTCCGCGATTCTGCTTGAACCCAATTAAAATATTTGGTGGCAGTTTTGGAGGCCCAACTTTATATGAGAATCCGCTCTATGTGTCACCAAATCAGGTACTGGCCAATATATTTTCCATCTATATTTATAATTTCCCAAGCTTTCCACTGACAATATAACTCTATCGTTATTGGTTGCTGATCCTTATAGATTCGAGCTTTGGAGAAAAAGAAGAAGTCTGGAAAGTTTGCAAAGAAGGTCAAAGCAAAGACAAGGAGGAAAATGCACGAGATGTCCAATCCTCTGGAGCCTGATGAGTTTGCAGATATGTGGAAAGATTGATTTTAAATACAACCGCAGCTACCACATAAAAGAAAAACCCATATTTCTCCTATATTATCCTCGCATTATATTCCATAGCATTAAAGGGAGACTTTTGTGATTCTATAAATGTTATTTTCTGTAATTTCATGTGGGGTCTGGTTATTCTCTCTTATCAGACATTGAACCTAGTGGAAATTAAATTTTGACAGAGGCTTCAGTTTTGGATCATGGGTTTGTTTGATTGATGTGCTACTAGTATATTAACCAGGGATTATTTCGACTTTAATTAGTCAAATCTCGTTTATAAAGATGCTTTCACCTAAGATGTGATTTTTGTTGTGAGCTTTCCTCCCTTGTAGTGAACTGCCATTTTTT

Coding sequences of Glyma08g28320

Limit To All Plant Sequences

>Glyma08g28320.1   sequence type=CDS   gene model=Glyma08g28320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAAGAAAAGAAAACACAGTGAGACTACTCAAGCTGTAGCACAACCCAAAAAGGAAGAGGCTGCTCCAGAGAGACCGGCTAGGACCCTTTTGGGGTGGAAGGATAAGAATCAAGTTGAGGATGATTCACCAATATTTAGGAACAAAGAGAAGCTATTGGTCACTTGCTCTAGGCGCATCAATTACAGGTACCGGCATTTGATGTTGAATTTGGTCACACTTTTGCCTCATTGTAAGAAGGATAACAAAGTTGAATCAAAGGAAACTAAAGGAGCCACCCTCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAGTGCAGGAAGCATAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAATGGCCCATCTGTAAAGTTTCTAGTTAGTGCCGTTCACACAATGGAGGAATTGAAGCTAACGGGAAATCACCTACAAGGTTCGCGTCCAATTTTGACATTTTCAGCAAATTTTGAAAAAGATGCACATTGGAAACTATTAAAGGAGATGTTGTTACAGATATTTGAAACACCAAAGGACCACAGAAAGGCCAAGCCTTTCCATGATCACGTTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTCCGGAATTATCAGATCTCTGCTCATCATAATGAGTCGGACAAATTACCTAGAGGTGGCCTTGATAAAATGACATTGATTGAGGTTGGTCCGCGATTCTGCTTGAACCCAATTAAAATATTTGGTGGCAGTTTTGGAGGCCCAACTTTATATGAGAATCCGCTCTATGTGTCACCAAATCAGATTCGAGCTTTGGAGAAAAAGAAGAAGTCTGGAAAGTTTGCAAAGAAGGTCAAAGCAAAGACAAGGAGGAAAATGCACGAGATGTCCAATCCTCTGGAGCCTGATGAGTTTGCAGATATGTGGAAAGATTGA

>Glyma08g28320.2   sequence type=CDS   gene model=Glyma08g28320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAAGAAAAGAAAACACAGTGAGACTACTCAAGCTGTAGCACAACCCAAAAAGGAAGAGGCTGCTCCAGAGAGACCGGCTAGGACCCTTTTGGGGTGGAAGGATAAGAATCAAGTTGAGGATGATTCACCAATATTTAGGAACAAAGAGAAGCTATTGGTCACTTGCTCTAGGCGCATCAATTACAGGTACCGGCATTTGATGTTGAATTTGGTCACACTTTTGCCTCATTGTAAGAAGGATAACAAAGTTGAATCAAAGGAAACTAAAGGAGCCACCCTCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAGTGCAGGAAGCATAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAATGGCCCATCTGTAAAGTTTCTAGTTAGTGCCGTTCACACAATGGAGGAATTGAAGCTAACGGGAAATCACCTACAAGGTTCGCGTCCAATTTTGACATTTTCAGCAAATTTTGAAAAAGATGCACATTGGAAACTATTAAAGGAGATGTTGTTACAGATATTTGAAACACCAAAGGACCACAGAAAGGCCAAGCCTTTCCATGATCACGTTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTCCGGAATTATCAGATCTCTGCTCATCATAATGAGTCGGACAAATTACCTAGAGGTGGCCTTGATAAAATGACATTGATTGAGGTTGGTCCGCGATTCTGCTTGAACCCAATTAAAATATTTGGTGGCAGTTTTGGAGGCCCAACTTTATATGAGAATCCGCTCTATGTGTCACCAAATCAGGTACTGGCCAATATATTTTCCATCTATATTTATAATTTCCCAAGCTTTCCACTGACAATATAA

Predicted protein sequences of Glyma08g28320

Limit To All Plant Sequences

>Glyma08g28320.1   sequence type=predicted peptide   gene model=Glyma08g28320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKKRKHSETTQAVAQPKKEEAAPERPARTLLGWKDKNQVEDDSPIFRNKEKLLVTCSRRINYRYRHLMLNLVTLLPHCKKDNKVESKETKGATLNELVELKNCSSCLFFECRKHKDLYLWMAKCPNGPSVKFLVSAVHTMEELKLTGNHLQGSRPILTFSANFEKDAHWKLLKEMLLQIFETPKDHRKAKPFHDHVFVFSIVDDHIWFRNYQISAHHNESDKLPRGGLDKMTLIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKKKSGKFAKKVKAKTRRKMHEMSNPLEPDEFADMWKD*

>Glyma08g28320.2   sequence type=predicted peptide   gene model=Glyma08g28320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKKRKHSETTQAVAQPKKEEAAPERPARTLLGWKDKNQVEDDSPIFRNKEKLLVTCSRRINYRYRHLMLNLVTLLPHCKKDNKVESKETKGATLNELVELKNCSSCLFFECRKHKDLYLWMAKCPNGPSVKFLVSAVHTMEELKLTGNHLQGSRPILTFSANFEKDAHWKLLKEMLLQIFETPKDHRKAKPFHDHVFVFSIVDDHIWFRNYQISAHHNESDKLPRGGLDKMTLIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQVLANIFSIYIYNFPSFPLTI*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain