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Report for Sequence Feature Glyma08g28230

Feature Type:gene_model
Chromosome:Gm08
Start:22547098
stop:22550271
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g28230
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G02360AT Annotation by Michelle Graham. TAIR10: 6-phosphogluconate dehydrogenase family protein | chr3:482498-483958 FORWARD LENGTH=486 SoyBaseE_val: 0ISS
GO:0006098GO-bp Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt SoyBaseN/AISS
GO:0006888GO-bp Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009744GO-bp Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus SoyBaseN/AISS
GO:0009749GO-bp Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus SoyBaseN/AISS
GO:0009750GO-bp Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus SoyBaseN/AISS
GO:0010359GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of anion channel activity SoyBaseN/AISS
GO:0043090GO-bp Annotation by Michelle Graham. GO Biological Process: amino acid import SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005777GO-cc Annotation by Michelle Graham. GO Cellular Compartment: peroxisome SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0004616GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphogluconate dehydrogenase (decarboxylating) activity SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
GO:0016616GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor SoyBaseN/AISS
GO:0050661GO-mf Annotation by Michelle Graham. GO Molecular Function: NADP binding SoyBaseN/AISS
GO:0050662GO-mf Annotation by Michelle Graham. GO Molecular Function: coenzyme binding SoyBaseN/AISS
KOG2653 KOG 6-phosphogluconate dehydrogenase JGI ISS
PTHR11811Panther 6-PHOSPHOGLUCONATE DEHYDROGENASE JGI ISS
PF00393PFAM 6-phosphogluconate dehydrogenase, C-terminal domain JGI ISS
PF03446PFAM NAD binding domain of 6-phosphogluconate dehydrogenase JGI ISS
UniRef100_I1KWM7UniRef Annotation by Michelle Graham. Most informative UniRef hit: 6-phosphogluconate dehydrogenase, decarboxylating n=2 Tax=Glycine max RepID=I1KWM7_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1KWM7UniRef Annotation by Michelle Graham. Best UniRef hit: 6-phosphogluconate dehydrogenase, decarboxylating n=2 Tax=Glycine max RepID=I1KWM7_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g28230
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g28230
ParalogEvidenceComments
Glyma18g51260 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g28230 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g254500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g28230
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g28230
>Glyma08g28230.1   sequence type=CDS   gene model=Glyma08g28230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCAACCCTCAACAAGAATAGGCCTTGCTGGACTGGCTGTTATGGGCCAAAATCTAGCACTCAATATTGCTGAGAAAGGCTTTCCCATTTCTGTTTATAACCGAACCACTTCCAAGGTTGATGAGACTGTAGAACGAGCAAAACAAGAAGGAAATCTTCCAGTTTATGGCTACCATGACCCCGAAGCTTTTGTTCATTCCATTCAAAAGCCTAGGGTGATAATAATGCTTGTTAAGGCTGGGGCACCTGTTGACCAGACCATTAAGACCCTATCTGCATACATGGAAAAAGGTGACTGCATAATTGATGGTGGTAACGAATGGTACGAGAACACCGAAAGAAGAGAGAAATCGGTGGCTGAATTGGGTCTGCTCTACCTTGGGATGGGAGTTTCTGGTGGTGAGGAAGGTGCTCGTAATGGTCCCTCTTTGATGCCTGGTGGTTCGTTTGAGGCTTTCAAATACATAGAAGATATTCTTCTCAAGGTGGCAGCTCAAGTCCCTGACAGTGGTCCTTGCGTGACTTATATTGGTAAAGGTGGCTCTGGTAATTTTGTGAAAATGATCCACAATGGCATCGAATATGGTGACATGCAGCTGATTGCAGAGGCCTATGATGTGCTGAAGTCAGTTGGAAAGTTGTCAAATGAGGAACTACAAAGTGTCTTCTCAGAATGGAACAAGGGAGAACTTCTGAGTTTCCTGATTGAAATCACTGCAGATATATTTGGAATTAAGGATGATAAGGGAGATGGATATCTTGTTGACAAGGTCCTAGACAAGACTGGCATGAAGGGCACTGGTAAGTGGACTGTTCAGCAAGCTGCTGAATTATCAATTGCTGCTCCCACTATTGAAGCATCATTGGATGCAAGGTTCCTGAGTGGGTTGAAGGAGGAAAGAGTTGAAGCTGCAAAGGTCTTTAAATCAGGTGGTATTGGTGATATCGTGACTGATCAACCTGTAGACAAGAAAAAATTGGTTGATGATGTTAGGAAGGCTCTTTATGCAGCCAAAATCTGTAGTTATGCACAGGGAATGAATTTGATCCGTGCAAAGAGTATTGAAAAGGGTTGGGATTTGAAGTTGGGTGAACTGGCCCGGATTTGGAAAGGTGGTTGCATCATTAGAGCAATATTCTTAGACAGAATCAAGCAAGCGTATGATAGAAACCCTAATCTGGCAAACCTTCTTGTGGATCCAGAGTTTGCAAAGGAAATAATCGATCGCCAATCTGCCTGGAGGAGAGTTGTTTGCCTTGCTATCAATTCTGGTATCAGCACTCCAGGTATGTCTGCTAGTCTTGCTTATTTTGACACTTACAGAAGGGAAAGGTTGCCAGCTAATTTGGTGCAAGCTCAACGAGACTACTTTGGTGCTCATACATATGAAAGGGTTGACATAGAGGGGTCTTACCATACTGAGTGGTTCAAGCTTGCCAAACAGTCTAGAATTTAG
Predicted protein sequences of Glyma08g28230
>Glyma08g28230.1   sequence type=predicted peptide   gene model=Glyma08g28230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQPSTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPVYGYHDPEAFVHSIQKPRVIIMLVKAGAPVDQTIKTLSAYMEKGDCIIDGGNEWYENTERREKSVAELGLLYLGMGVSGGEEGARNGPSLMPGGSFEAFKYIEDILLKVAAQVPDSGPCVTYIGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQSVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAAELSIAAPTIEASLDARFLSGLKEERVEAAKVFKSGGIGDIVTDQPVDKKKLVDDVRKALYAAKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAIFLDRIKQAYDRNPNLANLLVDPEFAKEIIDRQSAWRRVVCLAINSGISTPGMSASLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDIEGSYHTEWFKLAKQSRI*






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