Report for Sequence Feature Glyma08g28190
Feature Type: gene_model
Chromosome: Gm08
Start: 22484856
stop: 22488615
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g28190
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G30390 AT
Annotation by Michelle Graham. TAIR10: Transmembrane amino acid transporter family protein | chr3:11977112-11978827 REVERSE LENGTH=460
SoyBase E_val: 0 ISS
GO:0006865 GO-bp
Annotation by Michelle Graham. GO Biological Process: amino acid transport
SoyBase N/A ISS
GO:0005773 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: vacuole
SoyBase N/A ISS
GO:0005774 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0015171 GO-mf
Annotation by Michelle Graham. GO Molecular Function: amino acid transmembrane transporter activity
SoyBase N/A ISS
KOG1305
KOG
Amino acid transporter protein
JGI ISS
PTHR22950 Panther
AMINO ACID TRANSPORTER
JGI ISS
PF01490 PFAM
Transmembrane amino acid transporter protein
JGI ISS
UniRef100_G7KS18 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Amino acid transporter n=1 Tax=Medicago truncatula RepID=G7KS18_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1KWM4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KWM4_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g28190
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g28190
Paralog Evidence Comments
Glyma18g51221 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g28190 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g254200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g28190
Coding sequences of Glyma08g28190
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g28190.1 sequence type=CDS gene model=Glyma08g28190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGACGATTGGTAGTCTAGCACCTAAGGCAGAGAAGAAGAAATCAAGGAAGAACAAGACTGTTGTTGTTAATGAGAATGCACCCTTGTTGCCAAAAAGTCATGTTCAGGAGAGTGATGCTGGTTTTGATGATTTCAATGGAGCTTCATTTTCTGGGGCTGTTTTTAACTTATCCACCACAATTATTGGTGCTGGTATCATGGCCTTGCCTGCAACCTTGAAACAGTTGGGAATGATACCTGGTCTTCTTGCCATCATCATCATGGCTTTGTTGACAGAGAAGTCAATTGAGCTTTTGATTCGGTTTACCCGGGCTGGGAAGTCTGCTTCTTATGCTGGTCTCATGGGGGATTCCTTTGGGAATTATGGAAAAGCTCTGGTGCAGATATGTGTTATAATCAATAACATCGGTGTTCTGATTGTTTACATGATTATAATTGGTGATGTGCTCTCTGGAACATCTTCAAGTGGAGATCATCACTATGGTATCCTTGAAGGATGGTTTGGTGTGCAATGGTGGACAGGCCGGACATTTGTTGTACTTTTTACTACACTTGCCATATTTGTACCTCTTGCGAGCTTTAAGCGAATTGATTCATTGAGATTCACGTCCGCCCTTTCAGTCGCACTTGCAGTTGTTTTTCTAGTCATTGCCGTGGGAATTGCTGTTGTCAAGATATTTAGTGGAGGCATTGTGATGCCCAGACTCTTCCCTGTCACGACTGATGTGGCATCATTCTTCAGACTATTCACTGTAGTTCCTGTGTTTGTGACTGCGTATATCTGCCACTACAATGTTCACAGCATAGACAATGAACTTGAGGACTCCTCACAGATGCAAGGGGTTGTACAAACCGCCCTTGTTCTATGCTCTTCAGTGTATGTAATGATAAGCTTCTTTGGGTTCCTCCTATTTGGCGAAGGAACTCTTGATGATGTACTGGCCAATTTCGATACCGATCTTGGAATTCCTTTCGGTTCTGTGCTCAATGATGCTGTTCGTATAAGCTATGCTGCGCACCTGATGCTTGTATTTCCAGTTGTCTTCTTTCCGTTGCGTCTTAACATAGATGGTCTCCTCTTCTCAAAATCAAGGCCTCTGGTTCTGGATAACGTCAGATTTGCATCACTCACTGTTGCCCTTATTGGTGTTATCTTCCTGGGAGCAAATTTCATACCTAGCATTTGGGATGCCTTCCAGTTTACTGGAGCAACTGCCGCAGTCTGTATAGGATTCATTTTTCCAGCTGCCATCACTCTTAAGGACCGCTACAACATTGCTACTAAATCAGACAAGATTTTGTCTGTCATTATGATAGTCCTTGCAGTCTTCTCAAACGTTGTGGCTATATACAGTGATGCATATGCCTTGATCAAGCAGAACAAAACTTCACGCGAATGA
Predicted protein sequences of Glyma08g28190
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g28190.1 sequence type=predicted peptide gene model=Glyma08g28190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MTIGSLAPKAEKKKSRKNKTVVVNENAPLLPKSHVQESDAGFDDFNGASFSGAVFNLSTTIIGAGIMALPATLKQLGMIPGLLAIIIMALLTEKSIELLIRFTRAGKSASYAGLMGDSFGNYGKALVQICVIINNIGVLIVYMIIIGDVLSGTSSSGDHHYGILEGWFGVQWWTGRTFVVLFTTLAIFVPLASFKRIDSLRFTSALSVALAVVFLVIAVGIAVVKIFSGGIVMPRLFPVTTDVASFFRLFTVVPVFVTAYICHYNVHSIDNELEDSSQMQGVVQTALVLCSSVYVMISFFGFLLFGEGTLDDVLANFDTDLGIPFGSVLNDAVRISYAAHLMLVFPVVFFPLRLNIDGLLFSKSRPLVLDNVRFASLTVALIGVIFLGANFIPSIWDAFQFTGATAAVCIGFIFPAAITLKDRYNIATKSDKILSVIMIVLAVFSNVVAIYSDAYALIKQNKTSRE*