Glyma08g28040 - SoyBase

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Report for Sequence Feature Glyma08g28040

Feature Type:	gene_model
Chromosome:	Gm08
Start:	22305159
stop:	22310312
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g28040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G15730	AT	Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein \| chr5:5131284-5133046 FORWARD LENGTH=434	SoyBase	E_val: 1.00E-176	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0030968	GO-bp	Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response	SoyBase	N/A	ISS
GO:0043069	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF741	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_C6ZRN6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein-serine/threonine kinase n=1 Tax=Glycine max RepID=C6ZRN6_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_C6ZRN6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Protein-serine/threonine kinase n=1 Tax=Glycine max RepID=C6ZRN6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g28040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g28040

Paralog	Evidence	Comments
Glyma18g51110	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g28040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g253100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g28040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g28040

Limit To All Plant Sequences

>Glyma08g28040.4   sequence type=transcript   gene model=Glyma08g28040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATTTATGAACAGCAATTAGGCAATTATTGGATTGACATGCCTTTTTTTCTTTAATCGAAAAATGAAGACGCCGTCGCTGTGTTTGAAGAAAGACCCACCAAATTAATCCTCATTTTTTCCTTTTTATTTCGTTTTCGGCTTCAAAGCATGAATAAGCCTCCAACTCAGACCTCTTCCACTTTTTTTTTCAGTTTTCATTTCCCTTTACACTTTCTTTCTCTCTTCTCCATCTGGCTACCTCATTCTTAATAAGCACAATTACCAAAAGTGGGGGCTGTTTTCTGAATCACAAGATTCATCTTTGAAGTTGGTGGTGGATGAACTGTTGAATTGGTGTCAGTTCTAGCAGGATAGAGTGTTGAATTAGCTTAAAAAGTTGAAATTTTGTTACTTTTGTGGCAGTGAACCTGTCTAGTGAGAGAGTTATGCAAGATGATTGAGTTGCTTGAATATCAAGAGAGGTCAAGTGATGGTTGATCAAGCTGATTTAGTTATCGTTTGTGTCTCTGTTGGGGTGGCCCTTGGAGTTTTGATTGCTTGCCTCATATATTTTGGCATAAGGTGGTACAAGAAGCGAGCTCATCGTCTTAGCCGATCTGCGAACGAGCCTAGCTTAACAACTATCCCTATACGAACAAATGGATTAGAAACTAGCATTGACTTCAGTGCTTCTCTCACCAGTTCCATAGCCACTTCAAGGTCACCAAATCCTCACAATCCTCACAAAAGCTCACATTCAACTTGGTGGAGTCATCAGAATAAAGATGGGTTTGCTTCGGTATCAGGCATTCTGAAGTACTCATACAAAGAAATTCAAAAGGCCACACAAAACTTCACAAATACATTGGGAGAAGGATCATTTGGCACAGTTTATAAAGCAATGATGCCTACAGGAGAGGTGGTAGCTGTGAAGATGCTTGGACCCAATTCTAAACAAGGGGAGAAAGAATTTCAAACAGAGGTGCTTCTGCTAGGAAGACTGCATCATCGGAATCTTGTAAATTTGTTAGGATACTGCATAGATAAAGGACAGTTTATGCTGGTTTATGAGTTCATGAGTAATGGAAGTTTAGAAAACCTTTTATATGGTGAAGAAAAGGAATTGAGTTGGGATGAAAGGCTGCAAATTGCTGGTGATATTTCACACGGAATAGAATACCTTCATGAAGGGGCAGTCCCACCCGTCGTACATCGTGATTTGAAATCCGCGAATATATTACTTGATCACTCAATGAGAGCTAAGGTTTCTGATTTTGGGTTCTCAAAGGAAGAGGTCTTTGATGGTCGTAATTCTGGCCTTAAAGGTACATATGGCTACATGGACCCAGCATACATTTCCTCAAGCAAGTTCACAGTGAAGAGTGACATTTACAGTTTTGGTATAATAATTTTTGAACTCATCACTGCCATCCACCCACATCAAAATTTGATGGAATATATCCACCTTGCTGCAATGGATTATGATGGTGTAGATGGAATTCTTGACAAACAACTTGTGGGAAAATGCAATCTTGAAGAAGTGAGGCAGCTTGCTAAAATTGCACACAAATGTTTACACAAATCACCTAGGAAACGCCCCTCCATAGGTGAGGTTTCGCTGGGTATATTGAGGATTAAGCAAAAGCGCCTCATGAAAGAAGACTCCATGTCATTTGCAAGCAGTAACTTCTCCCGAAGTGTGAGTCAAATAGAGGAGCAACAGGTTGAATTAACTAAAATAACCACCATAAACCACAGGGAAATGGGGTGAACTCATTCATATGTTTTGGGGTGAATTTTTTTTTTTTGTAGGCCTTTGGGAACCAAGGAAGTTTGTAGAAAAAACCATCGATTGTCGCTAGCTGTAAAATGTGAGTCAATATGTACAGATAACAAGAGCGGATCCCATGCTACTCTGAAACATTTTGATTTGTGAATGATCAGTTCTGCCTTGTGAGTTTTTGTTGCTAAATAACAAATAAGTTCTATATATGACCACCAACAATTTATACCAATGAATGCATGCTTTCTG

Coding sequences of Glyma08g28040

Limit To All Plant Sequences

>Glyma08g28040.3   sequence type=CDS   gene model=Glyma08g28040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGATCAAGCTGATTTAGTTATCGTTTGTGTCTCTGTTGGGGTGGCCCTTGGAGTTTTGATTGCTTGCCTCATATATTTTGGCATAAGGTGGTACAAGAAGCGAGCTCATCGTCTTAGCCGATCTGCGAACGAGCCTAGCTTAACAACTATCCCTATACGAACAAATGGATTAGAAACTAGCATTGACTTCAGTGCTTCTCTCACCAGTTCCATAGCCACTTCAAGGTCACCAAATCCTCACAATCCTCACAAAAGCTCACATTCAACTTGGTGGAGTCATCAGAATAAAGATGGGTTTGCTTCGGTATCAGGCATTCTGAAGTACTCATACAAAGAAATTCAAAAGGCCACACAAAACTTCACAAATACATTGGGAGAAGGATCATTTGGCACAGTTTATAAAGCAATGATGCCTACAGGAGAGGTGGTAGCTGTGAAGATGCTTGGACCCAATTCTAAACAAGGGGAGAAAGAATTTCAAACAGAGGTGCTTCTGCTAGGAAGACTGCATCATCGGAATCTTGTAAATTTGTTAGGATACTGCATAGATAAAGGACAGTTTATGCTGGTTTATGAGTTCATGAGTAATGGAAGTTTAGAAAACCTTTTATATGGTGAAGAAAAGGAATTGAGTTGGGATGAAAGGCTGCAAATTGCTGGTGATATTTCACACGGAATAGAATACCTTCATGAAGGGGCAGTCCCACCCGTCGTACATCGTGATTTGAAATCCGCGAATATATTACTTGATCACTCAATGAGAGCTAAGGTTTCTGATTTTGGGTTCTCAAAGGAAGAGGTCTTTGATGGTCGTAATTCTGGCCTTAAAGGTACATATGGCTACATGGACCCAGCATACATTTCCTCAAGCAAGTTCACAGTGAAGAGTGACATTTACAGTTTTGGTATAATAATTTTTGAACTCATCACTGCCATCCACCCACATCAAAATTTGATGGAATATATCCACCTTGCTGCAATGGATTATGATGGTGTAGATGGAATTCTTGACAAACAACTTGTGGGAAAATGCAATCTTGAAGAAGTGAGGCAGCTTGCTAAAATTGCACACAAATGTTTACACAAATCACCTAGGAAACGCCCCTCCATAGGTGAGGTTTCGCTGGGTATATTGAGGATTAAGCAAAAGCGCCTCATGAAAGAAGACTCCATGTCATTTGCAAGCAGTAACTTCTCCCGAAGTGTGAGTCAAATAGAGGAGCAACAGGTTGAATTAACTAAAATAACCACCATAAACCACAGGGAAATGGGGTGA

>Glyma08g28040.4   sequence type=CDS   gene model=Glyma08g28040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGATCAAGCTGATTTAGTTATCGTTTGTGTCTCTGTTGGGGTGGCCCTTGGAGTTTTGATTGCTTGCCTCATATATTTTGGCATAAGGTGGTACAAGAAGCGAGCTCATCGTCTTAGCCGATCTGCGAACGAGCCTAGCTTAACAACTATCCCTATACGAACAAATGGATTAGAAACTAGCATTGACTTCAGTGCTTCTCTCACCAGTTCCATAGCCACTTCAAGGTCACCAAATCCTCACAATCCTCACAAAAGCTCACATTCAACTTGGTGGAGTCATCAGAATAAAGATGGGTTTGCTTCGGTATCAGGCATTCTGAAGTACTCATACAAAGAAATTCAAAAGGCCACACAAAACTTCACAAATACATTGGGAGAAGGATCATTTGGCACAGTTTATAAAGCAATGATGCCTACAGGAGAGGTGGTAGCTGTGAAGATGCTTGGACCCAATTCTAAACAAGGGGAGAAAGAATTTCAAACAGAGGTGCTTCTGCTAGGAAGACTGCATCATCGGAATCTTGTAAATTTGTTAGGATACTGCATAGATAAAGGACAGTTTATGCTGGTTTATGAGTTCATGAGTAATGGAAGTTTAGAAAACCTTTTATATGGTGAAGAAAAGGAATTGAGTTGGGATGAAAGGCTGCAAATTGCTGGTGATATTTCACACGGAATAGAATACCTTCATGAAGGGGCAGTCCCACCCGTCGTACATCGTGATTTGAAATCCGCGAATATATTACTTGATCACTCAATGAGAGCTAAGGTTTCTGATTTTGGGTTCTCAAAGGAAGAGGTCTTTGATGGTCGTAATTCTGGCCTTAAAGGTACATATGGCTACATGGACCCAGCATACATTTCCTCAAGCAAGTTCACAGTGAAGAGTGACATTTACAGTTTTGGTATAATAATTTTTGAACTCATCACTGCCATCCACCCACATCAAAATTTGATGGAATATATCCACCTTGCTGCAATGGATTATGATGGTGTAGATGGAATTCTTGACAAACAACTTGTGGGAAAATGCAATCTTGAAGAAGTGAGGCAGCTTGCTAAAATTGCACACAAATGTTTACACAAATCACCTAGGAAACGCCCCTCCATAGGTGAGGTTTCGCTGGGTATATTGAGGATTAAGCAAAAGCGCCTCATGAAAGAAGACTCCATGTCATTTGCAAGCAGTAACTTCTCCCGAAGTGTGAGTCAAATAGAGGAGCAACAGGTTGAATTAACTAAAATAACCACCATAAACCACAGGGAAATGGGGTGA

Predicted protein sequences of Glyma08g28040

Limit To All Plant Sequences

>Glyma08g28040.3   sequence type=predicted peptide   gene model=Glyma08g28040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVDQADLVIVCVSVGVALGVLIACLIYFGIRWYKKRAHRLSRSANEPSLTTIPIRTNGLETSIDFSASLTSSIATSRSPNPHNPHKSSHSTWWSHQNKDGFASVSGILKYSYKEIQKATQNFTNTLGEGSFGTVYKAMMPTGEVVAVKMLGPNSKQGEKEFQTEVLLLGRLHHRNLVNLLGYCIDKGQFMLVYEFMSNGSLENLLYGEEKELSWDERLQIAGDISHGIEYLHEGAVPPVVHRDLKSANILLDHSMRAKVSDFGFSKEEVFDGRNSGLKGTYGYMDPAYISSSKFTVKSDIYSFGIIIFELITAIHPHQNLMEYIHLAAMDYDGVDGILDKQLVGKCNLEEVRQLAKIAHKCLHKSPRKRPSIGEVSLGILRIKQKRLMKEDSMSFASSNFSRSVSQIEEQQVELTKITTINHREMG*

>Glyma08g28040.4   sequence type=predicted peptide   gene model=Glyma08g28040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVDQADLVIVCVSVGVALGVLIACLIYFGIRWYKKRAHRLSRSANEPSLTTIPIRTNGLETSIDFSASLTSSIATSRSPNPHNPHKSSHSTWWSHQNKDGFASVSGILKYSYKEIQKATQNFTNTLGEGSFGTVYKAMMPTGEVVAVKMLGPNSKQGEKEFQTEVLLLGRLHHRNLVNLLGYCIDKGQFMLVYEFMSNGSLENLLYGEEKELSWDERLQIAGDISHGIEYLHEGAVPPVVHRDLKSANILLDHSMRAKVSDFGFSKEEVFDGRNSGLKGTYGYMDPAYISSSKFTVKSDIYSFGIIIFELITAIHPHQNLMEYIHLAAMDYDGVDGILDKQLVGKCNLEEVRQLAKIAHKCLHKSPRKRPSIGEVSLGILRIKQKRLMKEDSMSFASSNFSRSVSQIEEQQVELTKITTINHREMG*

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