Report for Sequence Feature Glyma08g28020
Feature Type: gene_model
Chromosome: Gm08
Start: 22262902
stop: 22268719
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g28020
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G30300 AT
Annotation by Michelle Graham. TAIR10: O-fucosyltransferase family protein | chr3:11921390-11924254 REVERSE LENGTH=677
SoyBase E_val: 0 ISS
GO:0000394 GO-bp
Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation
SoyBase N/A ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0009086 GO-bp
Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process
SoyBase N/A ISS
GO:0005768 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endosome
SoyBase N/A ISS
GO:0005794 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus
SoyBase N/A ISS
GO:0005802 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network
SoyBase N/A ISS
GO:0016757 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups
SoyBase N/A ISS
PF10250 PFAM
GDP-fucose protein O-fucosyltransferase
JGI ISS
UniRef100_G7KRZ2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: DUF246 domain-containing protein n=1 Tax=Medicago truncatula RepID=G7KRZ2_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI0002339238 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002339238 related cluster n=1 Tax=unknown RepID=UPI0002339238
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g28020
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma08g28020
Paralog Evidence Comments
Glyma18g51090 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g28020 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g252900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g28020
Coding sequences of Glyma08g28020
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g28020.1 sequence type=CDS gene model=Glyma08g28020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAAAGGGGAAGTGAAAATGAAGTCAAAGATGAAATGGGTTGGTCTGCTCGGCCTTGTGCTCTCGGCTTTCTCTATCTTCATTCATTTCCTCCTTGCTAGATTCACTCAAATGGGTGTTGCAGAATATGAGTCCTCTGTTACAATCTTCTCTTGGAGACCCGTCTTTGAGAAACCAATTCCCCCCACAAATACTCCCTCTTATAGAAAATTATGGGGTCCGGTGAAGCGTCTTGAATCACTATATCCGGATTCAAATCCACGAGGACATTATGCTGATCCTGTTTCAGAAACAAATGGGTTTATTTTTGTCCGGATACAAGGTGGTTTTCATGAGATCAGGAATTCGATATGTGATGTTGTTGTGGTTGCTCGACTTCTCAATGCTACATTAGCTATGCCTGAGATCCAATCAACGACCAGCAGCAAGGGAATAAGTTCTCAGTTCAAGAGTTTTGCATACCTATATAATGAAGAGCAATTTGTCCTCTCATTAGCAAAAGATGTCACAGTTGTGAGAACTCTTCCTAAAGATCTGAAAGGTGCAAGGAGAAAGAAGGAAATTCCTGTTTTTAAAGTTCCATATTCAGCATCACCTTTTTATTATTTTCACCATGTTCTCCCTGTATTAAAGAAGCATTCGGTGGTTGAACTAGTTGTTTCTGAAGGTGGATGCTTGAAGGCCACTCTTCCTCCCAATTTTGAAGAATATCAAAGGCTGAGATGTAGAGTTTCTTTTCATGCTCTTCAGTTTCGGCAGGAAGTCCAGGAACTTTCTGCTAAGATTTTGCAGAGATTGCGAGCTCCTGGTCGTCCATTCATTGCATTTGACCCTGGCATGACTAGAGAATCTTTAACGTATCATGGTTGTGCAGAACTATTCCAGGATGTACATACCGAACTTATTCAACACAAACGATCATGGATGATAAAACGTGGGATTGTCAAGGGGAAGCTTTCAGTCAACTCAGCTGAAGAAAGACTAAAAGGCTCCTGTCCTTTAATGCCTCAGGAGATTGGTATTCTTCTTCGTGCTTATGGATACTCGAAGGATGCAATTATATATGTATCTGGAGGAGAAGTCTTTGGTGGTCAAAGAACATTGATTCCTCTTCATGCTATGTTTGAAAATGTCATTGATAGAACTTCTCTAAGCACTCCTTGGGAGATGATTAGGCTCTATGGGAAAGAGGTGAACCTTGTTGATACTCCTGGACCGCCACCTTTTGTTGAAGAAGTAACCAAGCATGCAGCTTGGAAAAGTGCAGGTCCACGTCCTCGACCACTTCCTCCACCTCCAGCTAGGCCGAAATCATACAACATAGAAGGTTGGTGGGGTTGGGTAGCTGAGAGTGATAATGAGCCTGATAGTACGGTTATCGAACTGAGGACCAATGCCCATAAATTACTATGGGAGGCTATCGACTACGTGATTTGTGTTGAAGCTGATGTTTTCATCCCTGGATTTGACCGAGACGGGAAGGGGCATCCAAATTTTGCTAGCTTGGTGATGGGGCACAGGCTCTATCTGTCAGCTGCATCAAAGACATTTAGACCTGACAGAAAGGAAGTGGCTAAACTTTTAGATGAGATTCGGGACCACGGGCATCATGCAAATCATACATGGCTAGAATCAGTTCGCAGGCATCTGAAAAAAACATTACTTGATGGAATTATGGAAGCATCAAATAAATCAAAACTACTATCCTTTCTCTCTCATCCAGTCCCTGAATGCTCTTGTTCACGTGATTCCTTTGAAGTATCAAAGAATTCTTCTAGCCCTCTTACTTCCCAATTAGTGACATCTCTTGGTGTTGCTCACCGGTGTCCTGCATGGATGGACACTGGTCCAATTTCTCAATCAAAAGATAAGGAAAATGAGGAGGACGTATATGAGGATGATTCTGTATCTGAGTTATTCTTTAAACAAAATGCTGAAAATCATGAAGGTGATTCAGAAGTAAACATTAAAGAAGAAAATCAATTTGAGGATCAAGAAGATGACAGTGGGGAAAGATGA
Predicted protein sequences of Glyma08g28020
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g28020.1 sequence type=predicted peptide gene model=Glyma08g28020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MKGEVKMKSKMKWVGLLGLVLSAFSIFIHFLLARFTQMGVAEYESSVTIFSWRPVFEKPIPPTNTPSYRKLWGPVKRLESLYPDSNPRGHYADPVSETNGFIFVRIQGGFHEIRNSICDVVVVARLLNATLAMPEIQSTTSSKGISSQFKSFAYLYNEEQFVLSLAKDVTVVRTLPKDLKGARRKKEIPVFKVPYSASPFYYFHHVLPVLKKHSVVELVVSEGGCLKATLPPNFEEYQRLRCRVSFHALQFRQEVQELSAKILQRLRAPGRPFIAFDPGMTRESLTYHGCAELFQDVHTELIQHKRSWMIKRGIVKGKLSVNSAEERLKGSCPLMPQEIGILLRAYGYSKDAIIYVSGGEVFGGQRTLIPLHAMFENVIDRTSLSTPWEMIRLYGKEVNLVDTPGPPPFVEEVTKHAAWKSAGPRPRPLPPPPARPKSYNIEGWWGWVAESDNEPDSTVIELRTNAHKLLWEAIDYVICVEADVFIPGFDRDGKGHPNFASLVMGHRLYLSAASKTFRPDRKEVAKLLDEIRDHGHHANHTWLESVRRHLKKTLLDGIMEASNKSKLLSFLSHPVPECSCSRDSFEVSKNSSSPLTSQLVTSLGVAHRCPAWMDTGPISQSKDKENEEDVYEDDSVSELFFKQNAENHEGDSEVNIKEENQFEDQEDDSGER*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
