Glyma08g28000 - SoyBase

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Report for Sequence Feature Glyma08g28000

Feature Type:	gene_model
Chromosome:	Gm08
Start:	22248427
stop:	22252034
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g28000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G15740	AT	Annotation by Michelle Graham. TAIR10: O-fucosyltransferase family protein \| chr5:5134788-5136956 REVERSE LENGTH=508	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
PF10250	PFAM	GDP-fucose protein O-fucosyltransferase	JGI		ISS
UniRef100_I1KWK9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1KWK9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q93ZR8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: O-fucosyltransferase-like protein n=3 Tax=Arabidopsis thaliana RepID=Q93ZR8_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g28000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g28000

Paralog	Evidence	Comments
Glyma18g51070	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g28000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g252700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g28000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g28000

Limit To All Plant Sequences

>Glyma08g28000.1   sequence type=CDS   gene model=Glyma08g28000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGTTGAAATGGGGAAAGGACTACTGCTGTGACACTAAGGGGATAAAGATGGAGCTCAAAGTTGAGAAGCATGAGACTTTGATTATAAGGCCTAGAATCAAGATGTGGATGGCTAGGGCCATTACAATTGTGCTGCTTTGGACTAGTCTTGTTCAGCTGATTGCACTGGGAGAATTGTTGGGACCAAGTTTGTTAAGGGGCATGCCTTATTGTTTCAGTTCTCCATCTGTAGATAAGTTTTTGGCTCCAGCCAAGGCAGTGCTCCCACCCAAAAGGATTTATAGGAATAATGGTTATCTTCTGGTTTCTTGCAATGGTGGACTCAACCAAATGCGATCAGCAATATGTGATATGGTTGCTATTGCCAGACACTTAAATGTCACTCTCATAGTTCCAGAGCTGGATAAAGCCTCTTTCTGGGCTGATTCAAGTGACTTCAAAGATATATTTGATGTAGATCATTTCATTACCTCCTTGAGAGACGAGGTTCGAATAATAAAGATACTGCCACCTAAGATCAAGAAAAGAGTTGAACTAGGATTATTATACTCAATGCCACCCATTAGCTGGTCTAATATCTCATACTATGAAAATCAGGTCCTTCCTCTGTTGCTGAAACACAAGGTCATACACCTAAATAGAACAGATGCTAGACTTGCAAATAATGGACTACCTGCTGAGATTCAGAAGCTACGATGCCGAGTAAACTTCAATGCTCTGAGGTTTACTACTCAGATAGAAGAACTTGGCAGAAGGATAGTCAAGGTTTTGAGGGAAAAGGGACCTTTCCTTGCACTTCATCTTAGATATGAGATGGACATGTTGGCGTTCTCTGGCTGTACTCATGATTGTGACAGCAAAGAGGAGGAGGAACTCACAAGAATGAGATATGCATATCCTGGCTGGAAGGAAAAAGTTATTAATTCTGAGCTTAAGAGGAAAGAAGGCTTGTGCCCTTTAACACCTGAGGAAACTGCCCTAGTATTGTCAGCACTTGGAATAGATCACAATGTTCAAATTTATATTGCTTCTGGAGAAATATATGGTGGAGAGAAAAGAATGGCAAGTTTACTAGGAGAGTTTCCTAATCTGGTGAGGAAAGAAACTCTGTTGGAACCTTCAGAGTTGATGTATTTCCAAAACCACTCTTCGCAAATGGCTGCAGTGGATTATCTTGTCTCCCTAGAGAGTGATATATTTATTCCAACATATGACGGGAACATGGCTAAAGTTGTGGAAGGCCATCGCAGATTTCTAGGATTCAAGAAAACTATACTACTGGATAGAAGGCTTCTGGTAAACCTGATAGACCAATACTATAACGGGTTGTTAAGTTGGGATGAGTTTTTCACTGCTGTGAAGGAAGCTCATGCCTATCGTATGGGAAGTCCCAAGAGAAGAATTATCATTCCAGACAAACCCAAAGAAGAAGACTATTTTTATGCCAACCCTCAGGAGTGTTTGCAATTGTTAGATGAACCATTAGAAAGCACATAA

Predicted protein sequences of Glyma08g28000

Limit To All Plant Sequences

>Glyma08g28000.1   sequence type=predicted peptide   gene model=Glyma08g28000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLKWGKDYCCDTKGIKMELKVEKHETLIIRPRIKMWMARAITIVLLWTSLVQLIALGELLGPSLLRGMPYCFSSPSVDKFLAPAKAVLPPKRIYRNNGYLLVSCNGGLNQMRSAICDMVAIARHLNVTLIVPELDKASFWADSSDFKDIFDVDHFITSLRDEVRIIKILPPKIKKRVELGLLYSMPPISWSNISYYENQVLPLLLKHKVIHLNRTDARLANNGLPAEIQKLRCRVNFNALRFTTQIEELGRRIVKVLREKGPFLALHLRYEMDMLAFSGCTHDCDSKEEEELTRMRYAYPGWKEKVINSELKRKEGLCPLTPEETALVLSALGIDHNVQIYIASGEIYGGEKRMASLLGEFPNLVRKETLLEPSELMYFQNHSSQMAAVDYLVSLESDIFIPTYDGNMAKVVEGHRRFLGFKKTILLDRRLLVNLIDQYYNGLLSWDEFFTAVKEAHAYRMGSPKRRIIIPDKPKEEDYFYANPQECLQLLDEPLEST*

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