Glyma08g27980 - SoyBase

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Report for Sequence Feature Glyma08g27980

Feature Type:	gene_model
Chromosome:	Gm08
Start:	22218612
stop:	22224223
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g27980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G49180	AT	Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein \| chr3:18229810-18231874 FORWARD LENGTH=438	SoyBase	E_val: 4.00E-169	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005834	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: heterotrimeric G-protein complex	SoyBase	N/A	ISS
GO:0080008	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
KOG0646	KOG	WD40 repeat protein	JGI		ISS
PTHR18763	Panther	WD-REPEAT PROTEIN 18	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
UniRef100_I1KWK6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KWK6_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2HSF1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WD repeat-containing protein n=1 Tax=Medicago truncatula RepID=Q2HSF1_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g27980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g27980

Paralog	Evidence	Comments
Glyma18g51050	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g27980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g252500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g27980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g27980

Limit To All Plant Sequences

>Glyma08g27980.2   sequence type=transcript   gene model=Glyma08g27980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTAGCCTCTTCCAAAACACAGAAGCACCATCTCCTAACATTGCTCAAAAGGTAGGTCTCGGTTTCGTTATTTCCACTGTGTAACGTTGAAGTCTCTTACGTTACCAACTGTGGTTCAGACGAAGGATGGAGGTTGTTTTGGCGTCGTCGTCCGTCGACGGCGGAATAGGGTGCTGGGACCTTCACACCGGCGCGGAGCAGCTCCGCTACAAATCTTGCACCTCCCCTTCTCACGGACTCATCTCCGTCGGTGCTCGCTTCATCGCTTCGTCGCAGCTTCGTGATGATCCCGCAGCCACTGGCTATGTTCTCTACTGGTCCTGGTCTAAGCCTCAAGTTGAAGTGAAGAGTTTTCCTGCTGAACAAATCAAACCTATTGCTGCTAATCATCCGGGAACCTATATAGCCGGTGGAGCTCCATCTGGTGACATTTACTTGTGGGAGGTTGAAACTGGTAGGCTGCTTAAGAAGTGGCGTGCTCATTTTAGGGCGGTTTCTTGCCTGGTGTTTTCCGAAGATGACTCGCTGCTGGTATCTGGTTCTGAAGATGGATCCGTAAGAGTTTGGTCTCTCTTCATGATATTTGATGATTTGCGATGTCAGCAAGCAAGTAATCTTTACGAGTATAGTTTTTCAGAGCACACCCTGACTGTGACTGATGTTGTTATTGGTAATGGAGGGTGCAATGCGATTATCGTGTCAGCTTCAAATGATCGGACTTGTAAGGTATGGAGCTTATCTAGGGGAATGCTACTAAGAAATATAGTATTCCCTTCAATAATTAATTGCATTGCATTGGATCCAGCCGAACATGTCTTTTATGCTGGCAGTGAAGATGGAAAGATATTTATCGCAGCACTTAACACTGAAAGCATCACCACCAATAATTATGGGATGCATATCATCGGTTCTTTTTCTAACCACAGCAATCAAGTTACTTGCTTAGCATATGGCACAAGTGAGAATTTGTTAATAACTGGGTCAGAGGATGGAATGGTTCGTGTTTGGAATGCGAGAACTCGTAACATTGTTCGCATGTTTAAACATGCTAAAGGACCTGTAAATAATATTCTGGTTGTTAGACGAGAAAATGACTCCAGTAATCACATATCTTCTAATGTACAAGCATCATCAAGAAAGCAGGGGTCTAATTTACCCCCTCCATTGGAAAAATATGCAAATTCAATTGATGACGACTTAGATATGAAGACTATGATCAGCCTTGGGGGTGGTAGGAGATCCGTGGATCCTTCATACCTCAGCTCTCATGTGATATCTAATTACATTAAGGAACTTCAGCATCAAGGTTCAGCTGCTGCTTCTGAAATGGAGATGGAGAAACTAAAACATGATTACCAAAAGTCAGTGCAAATGGCTAACCAGTTGAAGAAAATGAATGAAAACTTGCATCAATTCTGTGTAAAGGAGCTGTTGGATGGTGGTCAAGCTAGAACCTTAGATGAAGATCAGAATTAACACATTTTTTTTTCTTGCCAGTCACTTTTCAATTTTGTAGGATCTCTGGCATCATTTGATTTCCTTCTGCGAGTTTATAATGCTTCAATGCTGCTATTTTTTTTTGCCCCTCGTACCCTTTCTCTCGATGTGTGTTTTGCTGCTTAATGTTGTACTTAAAAGAATTTTCATCCTTTTGTATT

Coding sequences of Glyma08g27980

Limit To All Plant Sequences

>Glyma08g27980.1   sequence type=CDS   gene model=Glyma08g27980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGTTGTTTTGGCGTCGTCGTCCGTCGACGGCGGAATAGGGTGCTGGGACCTTCACACCGGCGCGGAGCAGCTCCGCTACAAATCTTGCACCTCCCCTTCTCACGGACTCATCTCCGTCGGTGCTCGCTTCATCGCTTCGTCGCAGCTTCGTGATGATCCCGCAGCCACTGGCTATGTTCTCTACTGGTCCTGGTCTAAGCCTCAAGTTGAAGTGAAGAGTTTTCCTGCTGAACAAATCAAACCTATTGCTGCTAATCATCCGGGAACCTATATAGCCGGTGGAGCTCCATCTGGTGACATTTACTTGTGGGAGGTTGAAACTGGTAGGCTGCTTAAGAAGTGGCGTGCTCATTTTAGGGCGGTTTCTTGCCTGGTGTTTTCCGAAGATGACTCGCTGCTGGTATCTGGTTCTGAAGATGGATCCGTAAGAGTTTGGTCTCTCTTCATGATATTTGATGATTTGCGATGTCAGCAAGCAAGTAATCTTTACGAGTATAGTTTTTCAGAGCACACCCTGACTGTGACTGATGTTGTTATTGGTAATGGAGGGTGCAATGCGATTATCGTGTCAGCTTCAAATGATCGGACTTGTAAGGTATGGAGCTTATCTAGGGGAATGCTACTAAGAAATATAGTATTCCCTTCAATAATTAATTGCATTGCATTGGATCCAGCCGAACATGTCTTTTATGCTGGCAGTGAAGATGGAAAGATATTTATCGCAGCACTTAACACTGAAAGCATCACCACCAATAATTATGGGATGCATATCATCGGTTCTTTTTCTAACCACAGCAATCAAGTTACTTGCTTAGCATATGGCACAAGTGAGAATTTGTTAATAACTGGGTCAGAGGATGGAATGGTTCGTGTTTGGAATGCGAGAACTCGTAACATTGTTCGCATGTTTAAACATGCTAAAGGACCTGTAAATAATATTCTGGTTGTTAGACGAGAAAATGACTCCAGTAATCACATATCTTCTAATGTACAAGCATCATCAAGAAAGCAGGGGTCTAATTTACCCCCTCCATTGGAAAAATATGCAAATTCAATTGATGACGACTTAGATATGAAGACTATGATCAGCCTTGGGGGTGGTAGGAGATCCGTGGATCCTTCATACCTCAGCTCTCATGTGATATCTAATTACATTAAGGAACTTCAGCATCAAGGTTCAGCTGCTGCTTCTGAAATGGAGATGGAGAAACTAAAACATGATTACCAAAAGTCAGTGCAAATGGCTAACCAGTTGAAGAAAATGAATGAAAACTTGCATCAATTCTGTGTAAAGGAGCTGTTGGATGGTGGTCAAGCTAGAACCTTAGATGAAGATCAGAATTAA

>Glyma08g27980.2   sequence type=CDS   gene model=Glyma08g27980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGTTGTTTTGGCGTCGTCGTCCGTCGACGGCGGAATAGGGTGCTGGGACCTTCACACCGGCGCGGAGCAGCTCCGCTACAAATCTTGCACCTCCCCTTCTCACGGACTCATCTCCGTCGGTGCTCGCTTCATCGCTTCGTCGCAGCTTCGTGATGATCCCGCAGCCACTGGCTATGTTCTCTACTGGTCCTGGTCTAAGCCTCAAGTTGAAGTGAAGAGTTTTCCTGCTGAACAAATCAAACCTATTGCTGCTAATCATCCGGGAACCTATATAGCCGGTGGAGCTCCATCTGGTGACATTTACTTGTGGGAGGTTGAAACTGGTAGGCTGCTTAAGAAGTGGCGTGCTCATTTTAGGGCGGTTTCTTGCCTGGTGTTTTCCGAAGATGACTCGCTGCTGGTATCTGGTTCTGAAGATGGATCCGTAAGAGTTTGGTCTCTCTTCATGATATTTGATGATTTGCGATGTCAGCAAGCAAGTAATCTTTACGAGTATAGTTTTTCAGAGCACACCCTGACTGTGACTGATGTTGTTATTGGTAATGGAGGGTGCAATGCGATTATCGTGTCAGCTTCAAATGATCGGACTTGTAAGGTATGGAGCTTATCTAGGGGAATGCTACTAAGAAATATAGTATTCCCTTCAATAATTAATTGCATTGCATTGGATCCAGCCGAACATGTCTTTTATGCTGGCAGTGAAGATGGAAAGATATTTATCGCAGCACTTAACACTGAAAGCATCACCACCAATAATTATGGGATGCATATCATCGGTTCTTTTTCTAACCACAGCAATCAAGTTACTTGCTTAGCATATGGCACAAGTGAGAATTTGTTAATAACTGGGTCAGAGGATGGAATGGTTCGTGTTTGGAATGCGAGAACTCGTAACATTGTTCGCATGTTTAAACATGCTAAAGGACCTGTAAATAATATTCTGGTTGTTAGACGAGAAAATGACTCCAGTAATCACATATCTTCTAATGTACAAGCATCATCAAGAAAGCAGGGGTCTAATTTACCCCCTCCATTGGAAAAATATGCAAATTCAATTGATGACGACTTAGATATGAAGACTATGATCAGCCTTGGGGGTGGTAGGAGATCCGTGGATCCTTCATACCTCAGCTCTCATGTGATATCTAATTACATTAAGGAACTTCAGCATCAAGGTTCAGCTGCTGCTTCTGAAATGGAGATGGAGAAACTAAAACATGATTACCAAAAGTCAGTGCAAATGGCTAACCAGTTGAAGAAAATGAATGAAAACTTGCATCAATTCTGTGTAAAGGAGCTGTTGGATGGTGGTCAAGCTAGAACCTTAGATGAAGATCAGAATTAA

Predicted protein sequences of Glyma08g27980

Limit To All Plant Sequences

>Glyma08g27980.1   sequence type=predicted peptide   gene model=Glyma08g27980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEVVLASSSVDGGIGCWDLHTGAEQLRYKSCTSPSHGLISVGARFIASSQLRDDPAATGYVLYWSWSKPQVEVKSFPAEQIKPIAANHPGTYIAGGAPSGDIYLWEVETGRLLKKWRAHFRAVSCLVFSEDDSLLVSGSEDGSVRVWSLFMIFDDLRCQQASNLYEYSFSEHTLTVTDVVIGNGGCNAIIVSASNDRTCKVWSLSRGMLLRNIVFPSIINCIALDPAEHVFYAGSEDGKIFIAALNTESITTNNYGMHIIGSFSNHSNQVTCLAYGTSENLLITGSEDGMVRVWNARTRNIVRMFKHAKGPVNNILVVRRENDSSNHISSNVQASSRKQGSNLPPPLEKYANSIDDDLDMKTMISLGGGRRSVDPSYLSSHVISNYIKELQHQGSAAASEMEMEKLKHDYQKSVQMANQLKKMNENLHQFCVKELLDGGQARTLDEDQN*

>Glyma08g27980.2   sequence type=predicted peptide   gene model=Glyma08g27980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEVVLASSSVDGGIGCWDLHTGAEQLRYKSCTSPSHGLISVGARFIASSQLRDDPAATGYVLYWSWSKPQVEVKSFPAEQIKPIAANHPGTYIAGGAPSGDIYLWEVETGRLLKKWRAHFRAVSCLVFSEDDSLLVSGSEDGSVRVWSLFMIFDDLRCQQASNLYEYSFSEHTLTVTDVVIGNGGCNAIIVSASNDRTCKVWSLSRGMLLRNIVFPSIINCIALDPAEHVFYAGSEDGKIFIAALNTESITTNNYGMHIIGSFSNHSNQVTCLAYGTSENLLITGSEDGMVRVWNARTRNIVRMFKHAKGPVNNILVVRRENDSSNHISSNVQASSRKQGSNLPPPLEKYANSIDDDLDMKTMISLGGGRRSVDPSYLSSHVISNYIKELQHQGSAAASEMEMEKLKHDYQKSVQMANQLKKMNENLHQFCVKELLDGGQARTLDEDQN*

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