Glyma08g27960 - SoyBase

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Report for Sequence Feature Glyma08g27960

Feature Type:	gene_model
Chromosome:	Gm08
Start:	22212537
stop:	22215182
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g27960

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G46790	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr3:17231975-17233948 REVERSE LENGTH=657	SoyBase	E_val: 0	ISS
GO:0000398	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0030422	GO-bp	Annotation by Michelle Graham. GO Biological Process: production of siRNA involved in RNA interference	SoyBase	N/A	ISS
GO:0031425	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast RNA processing	SoyBase	N/A	ISS
GO:0031426	GO-bp	Annotation by Michelle Graham. GO Biological Process: polycistronic mRNA processing	SoyBase	N/A	ISS
GO:0035196	GO-bp	Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA	SoyBase	N/A	ISS
GO:0043687	GO-bp	Annotation by Michelle Graham. GO Biological Process: post-translational protein modification	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24015:SF126	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_I1KWK5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KWK5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2HSF0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=Q2HSF0_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g27960

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g27960

Paralog	Evidence	Comments
Glyma18g51040	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g27960 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g252400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g27960

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g27960

Limit To All Plant Sequences

>Glyma08g27960.1   sequence type=CDS   gene model=Glyma08g27960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGGTGCTTCAGATTCCCCAATTTGTCAGACATGTTCCATCTCAAAGTCACCTCTGCTACACTTCCCATGTCTCCTCAAGAGTGCCGGTCTCTTTTGTTTCATTGAACCCTTCAGCCAATCTCATCAATGACATAAACAGCAACAACAACCAGTTGATACAATCATTATGCAAAGGAGGGAACCTTAAGCAGGCTCTTCATCTCCTGTGTTGCGAGCCCAATCCAACTCAGCAGACTTTTGAGCATTTAATTTATTCTTGTGCACAGAAGAACTCACTTTCCTATGGCCTTGACGTTCATCGCTGTCTTGTTGATAGTGGTTTTGACCAAGACCCTTTTTTAGCTACTAAACTAATCAATATGTACTATGAGCTTGGGTCTATTGACCGTGCTCTCAAGGTATTTGATGAAACTCGGGAAAGAACCATATATGTCTGGAATGCACTCTTCCGAGCACTGGCAATGGTGGGTCATGGTAAGGAGCTGCTAGATTTGTATATTCAGATGAATTGGATTGGGACCCCATCGGATAGGTTCACATATACATATGTGCTTAAGGCTTGTGTTGTTTCAGAGCTGTCAGTCTGCCCTCTCCGGAAGGGTAAGGAGATTCATGCCCATATTCTGCGACATGGCTATGAAGCAAATATTCATGTTATGACAACTTTGTTGGATGTATACGCTAAGTTTGGCAGTGTGTCGTATGCAAATTCCGTGTTTTGTGCAATGCCTACCAAGAACTTTGTCTCATGGAGTGCTATGATTGCATGCTTTGCAAAGAATGAAATGCCTATGAAAGCACTGGAACTGTTTCAGTTAATGATGTTTGAGGCATGCAATTCAGTTCCAAATTCAGTTACAATGGTTAACATGCTTCAAGCCTGTGCAGGTCTTGCTGCATTGGAGCAAGGGAAGTTGATTCATGGCTATATCCTTAGAAGGCAACTTGATTCTATACTGCCAGTTCTTAACGCCCTTATAACAATGTATGGAAGATGTGGCGAGGTTTTGATGGGACAAAGAGTCTTTGATAACATGAAGAAACGTGACGTTGTTTCATGGAATTCTTTGATTTCTATTTACGGTATGCATGGTTTTGGAAAGAAAGCAATCCAAATTTTCGAAAATATGATCCACCAAGGTGTTTCACCGAGTTATATATCGTTCATTACTGTTCTGGGTGCTTGCAGTCATGCAGGCCTTGTTGAGGAGGGAAAGATTTTGTTTGAATCCATGCTTAGTAAGTACAGGATCCATCCAGGTATGGAGCATTATGCTTGTATGGTGGATCTTCTTGGCCGAGCTAACAGGTTAGGTGAAGCAATCAAACTAATAGAAGATATGCATTTTGAACCTGGACCTACGGTTTGGGGTTCCCTTCTTGGATCTTGTAGGATTCACTGTAATGTTGAACTTGCAGAGAGAGCAAGCACTGTGCTTTTTGAGTTGGAGCCAAGGAATGCTGGTAATTATGTGCTTTTAGCAGATATTTATGCAGAAGCTAAGTTGTGGAGTGAAGCAAAGAGTGTGATGAAGCTATTGGAAGCTCGTGGCCTGCAAAAGCTTCCAGGTTGCAGCTGGATTGAAGTGAAAAGGAAGGTATACTCATTTGTCTCTGTTGATGAGCATAACCCACAAATTGAAGAAATTCATGCTTTGCTAGTTAAATTGTCAAATGAGATGAAGGCACAGGGTTATGTCCCACAGACAAACGTTGTTCTCTACGATCTTGACGAAGAAGAGAAAGAAAGAATTGTATTGGGACATAGCGAAAAGCTTGCAGTTGCTTTTGGACTCATTAATACTGCAAAAGGTGAAACCATAAGGATCAGAAAAAACTTGAGATTATGTGAAGACTGTCATGCCGTTACAAAATTTATTTCTAAATTTGCTAATAGAGAGATTCTTGTTAGAGATGTGAATCGCTTCCATCATTTTAGAGATGGAGTTTGTTCCTGTGGTGACTATTGGTAG

Predicted protein sequences of Glyma08g27960

Limit To All Plant Sequences

>Glyma08g27960.1   sequence type=predicted peptide   gene model=Glyma08g27960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWVLQIPQFVRHVPSQSHLCYTSHVSSRVPVSFVSLNPSANLINDINSNNNQLIQSLCKGGNLKQALHLLCCEPNPTQQTFEHLIYSCAQKNSLSYGLDVHRCLVDSGFDQDPFLATKLINMYYELGSIDRALKVFDETRERTIYVWNALFRALAMVGHGKELLDLYIQMNWIGTPSDRFTYTYVLKACVVSELSVCPLRKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQACAGLAALEQGKLIHGYILRRQLDSILPVLNALITMYGRCGEVLMGQRVFDNMKKRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGVSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRLGEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTVLFELEPRNAGNYVLLADIYAEAKLWSEAKSVMKLLEARGLQKLPGCSWIEVKRKVYSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYVPQTNVVLYDLDEEEKERIVLGHSEKLAVAFGLINTAKGETIRIRKNLRLCEDCHAVTKFISKFANREILVRDVNRFHHFRDGVCSCGDYW*

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