SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g27941

Feature Type:gene_model
Chromosome:Gm08
Start:22208275
stop:22211760
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g27941
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G06240AT Annotation by Michelle Graham. TAIR10: F-box family protein | chr3:1887336-1888619 FORWARD LENGTH=427 SoyBaseE_val: 4.00E-29ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR10775Panther AC-LIKE TRANSPOSASE-RELATED JGI ISS
PTHR10775:SF7Panther TRANSPOSASE-LIKE PROTEIN JGI ISS
PF00646PFAM F-box domain JGI ISS
PF07734PFAM F-box associated JGI ISS
UniRef100_G7JVS7UniRef Annotation by Michelle Graham. Most informative UniRef hit: F-box/kelch-repeat protein n=1 Tax=Medicago truncatula RepID=G7JVS7_MEDTR SoyBaseE_val: 5.00E-68ISS
UniRef100_I1KWK4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KWK4_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g27941
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g27941 not represented in the dataset
Glyma08g27941 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g27941
ParalogEvidenceComments
Glyma18g51030 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g27941 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g252300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g27941
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma08g27941
>Glyma08g27941.2   sequence type=transcript   gene model=Glyma08g27941   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTAATATTGATGAGGTTTAATAGGAACAAGCAATTGGAGTTACGTTAAGCGCGGTGGATTTAGTCCAAGAGCGGATAAGGAGAATGAAGAAGCACACTCAGACTCTCCCTCTGGAGTTGATCAGAGAAGTTCTTCTGAGATTGCCGGTGAGATCCGTTCTGCGTTTCAGGTGTGTTTGTAAGTCATGGCTTTCTCTGATCTCCGATCCCCAATTTCGCATTTCCCACTATGACCTAGCTGCAGCACCCACCCATCGACTTCTTCTCAGATCTAATAATTTTTACATCGAATCCGTTGATATAGAGGCAGAGCTTGAGAAAGACTCAAGTGCAGTGCATTTGATTCTCCCCCCTTCATCACCCCCACGCCATCGCTTCGAATATGACTATTATGCTGACTCTCACGATAAGCCTGATATTTTGGGATCATGCAGAGGCCTCATACTTTTATACTACCCGAGAAACAGTGATCACATTATATGGAATCCGTCATTAGGTGTCCAAAAACGATTACCATACTTAGCATATGATGTAACCTTTTGTCCTCTATATGGCTTTGGGTATGACCCTTCAACTGATGACTACTTGCTAATCGTGATTGGATTGCACGACTCTGAACATTATAAGTATGACACTGATGGGTCTGAAGATGATGAGTGCAAAGGAAAATGCCAGATTTTCTCCTTTAAAACCGATTCATGGTACATTGTGGATATTTTCGTTCCCTATAAGGATCTCGGCGGTAAATTCAGAGCTGGGTCGCTCTTTGGTGACATACTTCATTGGTTGGTTTTCTCCAAGGATAAAAAGGTTCCTGTCATTCTTGCCTTTGATCTGGTGCAAAGGAGTTTTTCTGAGATTCCTCTGTTTGATAATTTCGCTATGGAGAAATATGAAGTTGATAGCTTGAGAAGGGTAATGGGAGGATGTCTCAGTGTGTCTTGCTCGGTCCATGACGGTGCAACGGATGAAATATGGGTGATGAAAGAATATAAAGTGCAGTCATCTTGGACCCGGTCCGTTGTTATCCCTAGTAGTGGCTTTTCCCCCATATGCATCAACAAAGATGGTGGAATTCTTGGATCAAATATTTGTGGAAGACTAGAGAAACTTAATGACAAAGGAGAACTGCTTGAGCATCTCATTTATGGTGGAGAACAATGTTTGTGCTCTGCCAGACTACAGTCTGCTGTGTATAGAGAAAGTCTATTGTCGCTCCACAGTGTCATTGGGGTAACAAGGATTGGGGTAACAAGGAAAGACGACCATGAGGAAACAACTGAACATGACCAACAGTAACAAACAAGAAAAATCAGGGCCACAAAATATGCAAGAATCTATATAGTATCTTGATGTCACTTTCCTATCAATGCAAGACTTGTACAAGCTTGAAGTGTGCTACCATTGTAACTGAATCACAGTCCTCAAGCATCATTAGCTGAAACAGTTCCAGTGCTTTCATAGGCATCCACATTTCATTCTTTGCATAGCATGCAATGGTAGTGCTCCAAGAGACAAAGTTCTTAGCAAGCATTGCACAAAACACATATGATAGACTGCTTCATAGCATATACATCCAGCAGAGTTGTCATAACACGATTATTTGCATCATAGCCATGTTGCAGAATATTTAGTATGAATCTCCTTACGCTTCTGGGGAGGGCAGACTGTCAGCTCTGAAACAACTCAAGCCTTATACTTTATGTGAACCTATCTGATGGGATCCCAATCCAATTCCAGACATATATGGGGTTCTTTCCCAAGTTTCATCATAACTTGCAAGCATGATGAATAGACCCAATCTCATAATATGTTAACTGTTTAGTACTTTAGATACTGAACAGTGTACTTCAGTCCAGTCCTTTTTTCTAATGCAAACGTCTAGTACT
Coding sequences of Glyma08g27941
>Glyma08g27941.1   sequence type=CDS   gene model=Glyma08g27941   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAAGCACACTCAGACTCTCCCTCTGGAGTTGATCAGAGAAGTTCTTCTGAGATTGCCGGTGAGATCCGTTCTGCGTTTCAGGTGTGTTTGTAAGTCATGGCTTTCTCTGATCTCCGATCCCCAATTTCGCATTTCCCACTATGACCTAGCTGCAGCACCCACCCATCGACTTCTTCTCAGATCTAATAATTTTTACATCGAATCCGTTGATATAGAGGCAGAGCTTGAGAAAGACTCAAGTGCAGTGCATTTGATTCTCCCCCCTTCATCACCCCCACGCCATCGCTTCGAATATGACTATTATGCTGACTCTCACGATAAGCCTGATATTTTGGGATCATGCAGAGGCCTCATACTTTTATACTACCCGAGAAACAGTGATCACATTATATGGAATCCGTCATTAGGTGTCCAAAAACGATTACCATACTTAGCATATGATGTAACCTTTTGTCCTCTATATGGCTTTGGGTATGACCCTTCAACTGATGACTACTTGCTAATCGTGATTGGATTGCACGACTCTGAACATTATAAGTATGACACTGATGGGTCTGAAGATGATGAGTGCAAAGGAAAATGCCAGATTTTCTCCTTTAAAACCGATTCATGGTACATTGTGGATATTTTCGTTCCCTATAAGGATCTCGGCGGTAAATTCAGAGCTGGGTCGCTCTTTGGTGACATACTTCATTGGTTGGTTTTCTCCAAGGATAAAAAGGTTCCTGTCATTCTTGCCTTTGATCTGGTGCAAAGGAGTTTTTCTGAGATTCCTCTGTTTGATAATTTCGCTATGGAGAAATATGAAGTTGATAGCTTGAGAAGGGTAATGGGAGGATGTCTCAGTGTGTCTTGCTCGGTCCATGACGGTGCAACGGATGAAATATGGGTGATGAAAGAATATAAAGTGCAGTCATCTTGGACCCGGTCCGTTGTTATCCCTAGTAGTGGCTTTTCCCCCATATGCATCAACAAAGATGGTGGAATTCTTGGATCAAATATTTGTGGAAGACTAGAGAAACTTAATGACAAAGGAGAACTGCTTGAGCATCTCATTTATGGTGGAGAACAATGTTTGTGCTCTGCCAGACTACAGTCTGCTGTGTATAGAGAAAGTCTATTGTCGCTCCACAGTGTCATTGGGGTAACAAGGATTGGGGTAACAAGGAAAGACGACCATGAGGAAACAACTGAACATGACCAACAGTAA

>Glyma08g27941.2   sequence type=CDS   gene model=Glyma08g27941   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAAGCACACTCAGACTCTCCCTCTGGAGTTGATCAGAGAAGTTCTTCTGAGATTGCCGGTGAGATCCGTTCTGCGTTTCAGGTGTGTTTGTAAGTCATGGCTTTCTCTGATCTCCGATCCCCAATTTCGCATTTCCCACTATGACCTAGCTGCAGCACCCACCCATCGACTTCTTCTCAGATCTAATAATTTTTACATCGAATCCGTTGATATAGAGGCAGAGCTTGAGAAAGACTCAAGTGCAGTGCATTTGATTCTCCCCCCTTCATCACCCCCACGCCATCGCTTCGAATATGACTATTATGCTGACTCTCACGATAAGCCTGATATTTTGGGATCATGCAGAGGCCTCATACTTTTATACTACCCGAGAAACAGTGATCACATTATATGGAATCCGTCATTAGGTGTCCAAAAACGATTACCATACTTAGCATATGATGTAACCTTTTGTCCTCTATATGGCTTTGGGTATGACCCTTCAACTGATGACTACTTGCTAATCGTGATTGGATTGCACGACTCTGAACATTATAAGTATGACACTGATGGGTCTGAAGATGATGAGTGCAAAGGAAAATGCCAGATTTTCTCCTTTAAAACCGATTCATGGTACATTGTGGATATTTTCGTTCCCTATAAGGATCTCGGCGGTAAATTCAGAGCTGGGTCGCTCTTTGGTGACATACTTCATTGGTTGGTTTTCTCCAAGGATAAAAAGGTTCCTGTCATTCTTGCCTTTGATCTGGTGCAAAGGAGTTTTTCTGAGATTCCTCTGTTTGATAATTTCGCTATGGAGAAATATGAAGTTGATAGCTTGAGAAGGGTAATGGGAGGATGTCTCAGTGTGTCTTGCTCGGTCCATGACGGTGCAACGGATGAAATATGGGTGATGAAAGAATATAAAGTGCAGTCATCTTGGACCCGGTCCGTTGTTATCCCTAGTAGTGGCTTTTCCCCCATATGCATCAACAAAGATGGTGGAATTCTTGGATCAAATATTTGTGGAAGACTAGAGAAACTTAATGACAAAGGAGAACTGCTTGAGCATCTCATTTATGGTGGAGAACAATGTTTGTGCTCTGCCAGACTACAGTCTGCTGTGTATAGAGAAAGTCTATTGTCGCTCCACAGTGTCATTGGGGTAACAAGGATTGGGGTAACAAGGAAAGACGACCATGAGGAAACAACTGAACATGACCAACAGTAA
Predicted protein sequences of Glyma08g27941
>Glyma08g27941.1   sequence type=predicted peptide   gene model=Glyma08g27941   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKKHTQTLPLELIREVLLRLPVRSVLRFRCVCKSWLSLISDPQFRISHYDLAAAPTHRLLLRSNNFYIESVDIEAELEKDSSAVHLILPPSSPPRHRFEYDYYADSHDKPDILGSCRGLILLYYPRNSDHIIWNPSLGVQKRLPYLAYDVTFCPLYGFGYDPSTDDYLLIVIGLHDSEHYKYDTDGSEDDECKGKCQIFSFKTDSWYIVDIFVPYKDLGGKFRAGSLFGDILHWLVFSKDKKVPVILAFDLVQRSFSEIPLFDNFAMEKYEVDSLRRVMGGCLSVSCSVHDGATDEIWVMKEYKVQSSWTRSVVIPSSGFSPICINKDGGILGSNICGRLEKLNDKGELLEHLIYGGEQCLCSARLQSAVYRESLLSLHSVIGVTRIGVTRKDDHEETTEHDQQ*

>Glyma08g27941.2   sequence type=predicted peptide   gene model=Glyma08g27941   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKKHTQTLPLELIREVLLRLPVRSVLRFRCVCKSWLSLISDPQFRISHYDLAAAPTHRLLLRSNNFYIESVDIEAELEKDSSAVHLILPPSSPPRHRFEYDYYADSHDKPDILGSCRGLILLYYPRNSDHIIWNPSLGVQKRLPYLAYDVTFCPLYGFGYDPSTDDYLLIVIGLHDSEHYKYDTDGSEDDECKGKCQIFSFKTDSWYIVDIFVPYKDLGGKFRAGSLFGDILHWLVFSKDKKVPVILAFDLVQRSFSEIPLFDNFAMEKYEVDSLRRVMGGCLSVSCSVHDGATDEIWVMKEYKVQSSWTRSVVIPSSGFSPICINKDGGILGSNICGRLEKLNDKGELLEHLIYGGEQCLCSARLQSAVYRESLLSLHSVIGVTRIGVTRKDDHEETTEHDQQ*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo