Glyma08g27921 - SoyBase

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Report for Sequence Feature Glyma08g27921

Feature Type:	gene_model
Chromosome:	Gm08
Start:	22198230
stop:	22199132
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g27921

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PF00646	PFAM	F-box domain	JGI		ISS
UniRef100_G7JVT2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F-box family protein n=1 Tax=Medicago truncatula RepID=G7JVT2_MEDTR	SoyBase	E_val: 4.00E-26	ISS
UniRef100_I1KWK3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KWK3_SOYBN	SoyBase	E_val: 2.00E-117	ISS

Expression Patterns of Glyma08g27921

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g27921 not represented in the dataset	Glyma08g27921 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g27921 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g252200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g27921

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g27921

Limit To All Plant Sequences

>Glyma08g27921.1   sequence type=CDS   gene model=Glyma08g27921   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAACGCACACTCACACTCTCCCTCTCCCTCCGGAGTTGATAAGAGAAATTCTCCTCAGTTTGCCGGTGAATTCTCTTTTGCAATGCAAGCGTGTGTGTAAGGCATGGCTTTCTCTTATTTCCGATCCACAATTTTTCATTTCCCATTACATTTTGGGTTCTTGCAGAGGGCTCATACTTTTATACTACGACCGTAGCTGTGATCTCATTCTATGGAATCCATCAATAGGTGTCCACAGAATATCACCCAAGTTTAAGTGTGGTCTAACCCTTGTGTATCTCTATGGTTTCGGATTTTATCCTTTAATTCCTTCAATGAGACTCTTCATTGGTTGGTTTTCTCTACGAAGGAGATTTTCAGAGATTCCTCTGTTTGATCATTCCACTATGGAGAAATATGAGCTTTGTAGTTTGAGGGTGATGGGAGGATGTCTCAGTGTGTGTTGCTCGGTCCGAGGCTGTGCTACGGATGAAATATGGGCGATGAAAGAATATAAAGTGGACTCGTCCTGGACTAAGTCCATTGTTATCCCTAACAATGGGTTTTCCCCAATATGCATCACCAAAGATGGTGGAATTATTGGATCAAAGGAAGTGGAAGATTAG

Predicted protein sequences of Glyma08g27921

Limit To All Plant Sequences

>Glyma08g27921.1   sequence type=predicted peptide   gene model=Glyma08g27921   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKTHTHTLPLPPELIREILLSLPVNSLLQCKRVCKAWLSLISDPQFFISHYILGSCRGLILLYYDRSCDLILWNPSIGVHRISPKFKCGLTLVYLYGFGFYPLIPSMRLFIGWFSLRRRFSEIPLFDHSTMEKYELCSLRVMGGCLSVCCSVRGCATDEIWAMKEYKVDSSWTKSIVIPNNGFSPICITKDGGIIGSKEVED*

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