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Report for Sequence Feature Glyma08g27900

Feature Type:gene_model
Chromosome:Gm08
Start:22156394
stop:22160605
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g27900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G01140AT Annotation by Michelle Graham. TAIR10: CBL-interacting protein kinase 9 | chr1:64398-67512 REVERSE LENGTH=447 SoyBaseE_val: 4.00E-112ISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0010555GO-bp Annotation by Michelle Graham. GO Biological Process: response to mannitol stimulus SoyBaseN/AISS
GO:0043266GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of potassium ion transport SoyBaseN/AISS
GO:0051365GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to potassium ion starvation SoyBaseN/AISS
GO:0055075GO-bp Annotation by Michelle Graham. GO Biological Process: potassium ion homeostasis SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
PTHR24345Panther SERINE/THREONINE-PROTEIN KINASE PLK JGI ISS
PTHR24345:SF45Panther SERINE/THREONINE-PROTEIN KINASE PLK1 JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
PF03822PFAM NAF domain JGI ISS
UniRef100_C4P7W1UniRef Annotation by Michelle Graham. Most informative UniRef hit: CBL-interacting protein kinase 12 n=1 Tax=Vitis vinifera RepID=C4P7W1_VITVI SoyBaseE_val: 4.00E-118ISS
UniRef100_I1KWK2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KWK2_SOYBN SoyBaseE_val: 2.00E-169ISS

Expression Patterns of Glyma08g27900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g27900 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma08g27900
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g27900
>Glyma08g27900.2   sequence type=CDS   gene model=Glyma08g27900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTGCGGCTACATTCTTTCTTTGCCAGAGAATCTTCTTCTGGACTTAAATGGTGTTCTGAAAGTTACAGATTTTGGATTGAGTACATATGCGCAACAGGAGGATGAACTTCTTCGAACTGCTTGTGGAATTCCAAATTATGTTGCTCCTGAGGTGCTTAATGATAGAGGTTATGTTGGTTCTACATCTGATATCTGGTTATGTGGAGTCATCCTCTTTGTGCTTATGGCCGGGTATTTGCCCTTTGTTGAGCCAAATCATGCGAAACTGTACAAAAAAATTGGCAGGGCCCAATTTACATGTCCATCATGGTTTTCTCCTAAGGCAAAGAAACTATTGAAGCTTATTCTTGATCCAAACCCTCTAACAAGGATAAAAGTTCCTGAACTTTTAAAAGATGAATGGTTCAAAAAAGGATACAAACAAACAACTTTTATAATGGAAGAGGATATCAATGTAGATGATGTTGCTGCTGCTTTCAATGATTCTAAGGAAAATCTTGTGACGGAGAGAAAAGAGAAACCAGTGTCAATGAATGCTTTTGAGCACATATCTAGGTCACAAAGCTTCAACCTTGAAAATTTGTTTGAGAAGCAGCAAGGGTCTGTTAAGAGAGAAACACATTTTACCTCACAGCGCCCTACAAATGAAATCATGTCAAAAATTGAGGAAGTTGCCAAGCCTCTGGGATTTAATGTTCACAAGCGAAATTATAAGGTTGCCGAGATTCTCAAAGATCGTCCATCATGGTATTGTGACTGTCGATGCCTCAATGTATTGAGTGTAGTCTCAACAGGGAATGGGGGCACAATAGAGCTTATGTACATGCAGGTCTACTGA
Predicted protein sequences of Glyma08g27900
>Glyma08g27900.2   sequence type=predicted peptide   gene model=Glyma08g27900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MACGYILSLPENLLLDLNGVLKVTDFGLSTYAQQEDELLRTACGIPNYVAPEVLNDRGYVGSTSDIWLCGVILFVLMAGYLPFVEPNHAKLYKKIGRAQFTCPSWFSPKAKKLLKLILDPNPLTRIKVPELLKDEWFKKGYKQTTFIMEEDINVDDVAAAFNDSKENLVTERKEKPVSMNAFEHISRSQSFNLENLFEKQQGSVKRETHFTSQRPTNEIMSKIEEVAKPLGFNVHKRNYKVAEILKDRPSWYCDCRCLNVLSVVSTGNGGTIELMYMQVY*






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