Report for Sequence Feature Glyma08g27850
Feature Type: gene_model
Chromosome: Gm08
Start: 22123385
stop: 22127455
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g27850
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G06240 AT
Annotation by Michelle Graham. TAIR10: F-box family protein | chr3:1887336-1888619 FORWARD LENGTH=427
SoyBase E_val: 7.00E-30 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF00646 PFAM
F-box domain
JGI ISS
PF07734 PFAM
F-box associated
JGI ISS
UniRef100_D3YBB5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Galactose oxidase n=1 Tax=Trifolium repens RepID=D3YBB5_TRIRP
SoyBase E_val: 2.00E-58 ISS
UniRef100_I1KWK0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KWK0_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g27850
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma08g27850 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g252000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g27850
Coding sequences of Glyma08g27850
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g27850.2 sequence type=CDS gene model=Glyma08g27850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGAAGCACACTTTGTCTGTGACTCTGCCTCTGGAATTGATCAGAGAAATTCTTCTGCGATCGCCGGTGAGATCCGTTCTTCGTTTCAAGTGTGTTTGTAAGTCATGGCTTTCCCTAATTTCAGATCCCCAATTTACCCATTTTGACCTAGCTGCCTCACCCACCCATCGACTCATTCTCAGATCAAATTATTATGATAACTTTAACTATATTGAATCCATTGATATTGAAAGTCTGATTAAAACATGTCGCCAGCACATAGTGTATTTTCCATCACCTCCACGCGACCACCATGATGATGGTGAATATTATGATGTTCACAATCAACCCCAGATTTTGGGTTCTTGCAGAGGGCTTGTACTTTTACACTACTGGGGGAGCAGCGAAGAACTCATCTTATGGAATCCCTCACTAGGCGTCCACAAACGATTCCCAAAAACATACTTTCCATATGGGATACACGACGAATATGTATATGGTTTCGGGTTTGACGCATCAACAGATGACTACGGGCTAATTCTTATTGAATTTCCCGAGTTTAGCTTCGGCGAAACTGCAGTCTTCCTTTTCTCCTTCAAAACTGGGTCGTGGAAAAGAGACATTCCTGTTAGTGCTTCATACAACGATCTCGATGATATATTCAGTGTTGGGGATGAATTCAAAGCTGGGTCACTCCTCAATGGGGTTCTTCATTGGCTGGTTTTCTCGAAGGAAAGAAAGGTTCCCGTGATTATTGCCTTTGATTTGATACAAAGGAGTTTTTCAGAGATTCCTCTGTTCAATCATTTGACTACGGAAAATTATCATGTCTGCAGATTGAGGGTAGTGGGAGGATGCCTCTGCCTCATGGTCCTAGGCCGCGAAGCGGCTGAGATATGGGTGATGAAAGAATATAAAATGCAATCATCTTGGACTAAGTCCACTGTTATCCCTACTTTTGACTTCTACCCGATATGCGCCGCTGAAGATGGTGGAATTTTTGGATCAAATTGTGAAGGATTAGTGAAACACGATGACAATGGAGAGCTGTTTGACTATCACATCAGTGCTGAAGGTCAAAGGTTGTACTGTGCCAATCCTGCTATGTATCAAGAGAGTCTACTGTCCCTCCCCTGTGCCAATCGGAATGAAACAAGGGAAGATGACCAACATTAA
Predicted protein sequences of Glyma08g27850
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g27850.2 sequence type=predicted peptide gene model=Glyma08g27850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEKHTLSVTLPLELIREILLRSPVRSVLRFKCVCKSWLSLISDPQFTHFDLAASPTHRLILRSNYYDNFNYIESIDIESLIKTCRQHIVYFPSPPRDHHDDGEYYDVHNQPQILGSCRGLVLLHYWGSSEELILWNPSLGVHKRFPKTYFPYGIHDEYVYGFGFDASTDDYGLILIEFPEFSFGETAVFLFSFKTGSWKRDIPVSASYNDLDDIFSVGDEFKAGSLLNGVLHWLVFSKERKVPVIIAFDLIQRSFSEIPLFNHLTTENYHVCRLRVVGGCLCLMVLGREAAEIWVMKEYKMQSSWTKSTVIPTFDFYPICAAEDGGIFGSNCEGLVKHDDNGELFDYHISAEGQRLYCANPAMYQESLLSLPCANRNETREDDQH*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
