Glyma08g27812 - SoyBase

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Report for Sequence Feature Glyma08g27812

Feature Type:	gene_model
Chromosome:	Gm08
Start:	22112007
stop:	22114374
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g27812

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G22390	AT	Annotation by Michelle Graham. TAIR10: F-box associated ubiquitination effector family protein \| chr4:11813757-11815074 REVERSE LENGTH=402	SoyBase	E_val: 2.00E-13	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF07734	PFAM	F-box associated	JGI		ISS
UniRef100_G7KNC3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F-box/kelch-repeat protein n=1 Tax=Medicago truncatula RepID=G7KNC3_MEDTR	SoyBase	E_val: 2.00E-37	ISS
UniRef100_I1KWJ9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KWJ9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g27812

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g27812 not represented in the dataset	Glyma08g27812 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g27812 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma08g27812

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g27812

Limit To All Plant Sequences

>Glyma08g27812.2   sequence type=transcript   gene model=Glyma08g27812   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTACTCAAAGTAAGGAGAAAATAAAGCCCATTTTATGTCATTAGTTGATAGTAGAAATTTTATTGAGGAGCATCAGAAGGGCTAAGCAATCCAAGTTAAACATTGGATAACCCACAGAAGAGCTACGAGCATGGAAAATCACACTCTCCCTATGGATTTGATGAGAGAAATTCTTCTAAGATTGCCAGTGAGATCTGTTTCGCGTTTCAAGTGCGTATGTAAGTCATGGCTTTCTATCATCTCCGATCCCCAATTTGGCAATTCCCATTATGACCTCGCAGCCGCACCCTCCCATCGACTCATTCTCAGATCAAAATGTTATTCTCTTGAAGTTCAATCCATTGATACAGATGCACCACCAGACACATGTTCTGCTGCAATGTATTTGCTTCTCCCCCTTCAATCACCTCCACCTAAACCCAATGACTATGACAATTATGATGGTTTGCCCAATCGAGCTAAGATTTTGGGTTCATGAGGGTTTATACTTTTATATTACGAGATGAGTCGTGATCTTATTATGTGGAATCCGTTGACAAGATTCCGTAAACGATCACTAAACTTTGAAAATATGCTAACCCATCGATTTTTATATGGTTTTGGGTATGACACATCAACAGATGACTACTTGCTAATTATGATCCCGTTTCATTGGAAAACTGAAATCCAGGTTTTCTCATTCAAAACTAATTCCAGGAACAGAAAGATGATTAAACTTAATGTTCCATACCAGGGTATCGGCTCGAAATTCAGTATTGGATCACTCTTGAATGAGACACTTCATTGGTTGGTTTTCTCTAAGGATAAATGGGTTGATGTGATTATTGCCTTTGATCTTATAAAAAGGAGTTTATCAGAGATTGCTCTGTTTGATCATTTAACAAAGAAAAAATATGAAATGTTTAGTTTAAGAGTAATAGGAGGATGTCTCAGTGTGAGTTGCTCGGACCAAGACTGGGCAATGACTGAAATATGGATAATGAAAGAATATAAAGTGCAGTCATCTTGGACTAAGTCTTTTGTAATCCCTACATATGGCTTTTCCCCCATATGCATCACCAAAGATGGAGGAATTTTGGGATCAAATATGAGAGAAAGATTGGAGAAACATAATGACAAAGGAGAGTTGCTTGAGCATCTCGCCTGTGTTGCTGCTGCAGGTGAAGAGTACTACTGTGCCAACCAAGATCAACAATCTGCAATGTATAGAGAGAGTCAACTGTTTCCCAATGTCAGTTGGGAAACAAGTGAAGATCACCAACAGTAACAGACAAGAAAAAAAATCATGATATGCACAATGTTTGCTGGGAAGTGTGAATGGTAACGACAACTTAGCATTTGCTGGTTGCACCCAACCTATGGACAATATAAGTTAAATTGCGGTGGATCAGTGAGTGCTTTGAATAAAGCAGCTGCTGGAGGTGTATTTAGGGATTCAAATGGCCAGGTTTATGTTTTCTTATGCTGCTGATATTGGTTCTTGTTCAGCTGTTATAGCTGAACTTTGGACAATTTAATTTGGTTGGAGTCGTGGGTTCAATTGTTGATTCTGATTCAGAGGTGTCTAGCTACGTCTTTACTAAACAATGGATGTCCATCTTATCATCCTTGCTTTAGTCTGATTCAAGATATTAAGGACTAAGGAGTATTCCTTGTAGGGAGGTTCTTTGAAGTGAAATCATATGCTTTGAGAAGGGAACCAAGTTGCGGATGTTCTTGCGAATTTTGATTTATCCTTACATAAACAATTAAGAATATTTCCTGTTGTTTCTCATTTTATTACCAACGTCGTTAAAACTAATGTAATTTCTACTGCGTTTTCACGCGTGTTTTAATGATGAGTTCTTCGGTTCATCTCTTATCATTTTAAAAAAAAATTAATTATC

>Glyma08g27812.3   sequence type=transcript   gene model=Glyma08g27812   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAGTAAGGAGAAAATAAAGCCCATTTTATGTCATTAGTTGATAGTAGAAATTTTATTGAGGTTGTCTGTCAAATCTCTCTTCCGTTTCAAATGTGTTTATAAAGCATGACTCTCCCTCATTTCCAATTCCCATTTTGCAAAATCTCATTTTGACTTAGCTGCACACCCACTTAATGAATTTTTCTTAAATCAGAACTGAGATCCACTAAATAACAAGAGCATCAGAAGGGCTAAGCAATCCAAGTTAAACATTGGATAACCCACAGAAGAGCTACGAGCATGGAAAATCACACTCTCCCTATGGATTTGATGAGAGAAATTCTTCTAAGATTGCCAGTGAGATCTGTTTCGCGTTTCAAGTGCGTATGTAAGTCATGGCTTTCTATCATCTCCGATCCCCAATTTGGCAATTCCCATTATGACCTCGCAGCCGCACCCTCCCATCGACTCATTCTCAGATCAAAATGTTATTCTCTTGAAGTTCAATCCATTGATACAGATGCACCACCAGACACATGTTCTGCTGCAATGTATTTGCTTCTCCCCCTTCAATCACCTCCACCTAAACCCAATGACTATGACAATTATGATGGTTTGCCCAATCGAGCTAAGATTTTGGGTTCATGAGGGTTTATACTTTTATATTACGAGATGAGTCGTGATCTTATTATGTGGAATCCGTTGACAAGATTCCGTAAACGATCACTAAACTTTGAAAATATGCTAACCCATCGATTTTTATATGGTTTTGGGTATGACACATCAACAGATGACTACTTGCTAATTATGATCCCGTTTCATTGGAAAACTGAAATCCAGGTTTTCTCATTCAAAACTAATTCCAGGAACAGAAAGATGATTAAACTTAATGTTCCATACCAGGGTATCGGCTCGAAATTCAGTATTGGATCACTCTTGAATGAGACACTTCATTGGTTGGTTTTCTCTAAGGATAAATGGGTTGATGTGATTATTGCCTTTGATCTTATAAAAAGGAGTTTATCAGAGATTGCTCTGTTTGATCATTTAACAAAGAAAAAATATGAAATGTTTAGTTTAAGAGTAATAGGAGGATGTCTCAGTGTGAGTTGCTCGGACCAAGACTGGGCAATGACTGAAATATGGATAATGAAAGAATATAAAGTGCAGTCATCTTGGACTAAGTCTTTTGTAATCCCTACATATGGCTTTTCCCCCATATGCATCACCAAAGATGGAGGAATTTTGGGATCAAATATGAGAGAAAGATTGGAGAAACATAATGACAAAGGAGAGTTGCTTGAGCATCTCGCCTGTGTTGCTGCTGCAGGTGAAGAGTACTACTGTGCCAACCAAGATCAACAATCTGCAATGTATAGAGAGAGTCAACTGTTTCCCAATGTCAGTTGGGAAACAAGTGAAGATCACCAACAGTAACAGACAAGAAAAAAAATCATGATATGCACAATGTTTGCTGGGAAGTGTGAATGGTAACGACAACTTAGCATTTGCTGGTTGCACCCAACCTATGGACAATATAAGTTAAATTGCGGTGGATCAGTGAGTGCTTTGAATAAAGCAGCTGCTGGAGGTGTATTTAGGGATTCAAATGGCCAGGTTTATGTTTTCTTATGCTGCTGATATTGGTTCTTGTTCAGCTGTTATAGCTGAACTTTGGACAATTTAATTTGGTTGGAGTCGTGGGTTCAATTGTTGATTCTGATTCAGAGGTGTCTAGCTACGTCTTTACTAAACAATGGATGTCCATCTTATCATCCTTGCTTTAGTCTGATTCAAGATATTAAGGACTAAGGAGTATTCCTTGTAGGGAGGTTCTTTGAAGTGAAATCATATGCTTTGAGAAGGGAACCAAGTTGCGGATGTTCTTGCGAATTTTGATTTATCCTTACATAAACAATTAAGAATATTTCCTGTTGTTTCTCATTTTATTACCAACGTCGTTAAAACTAATGTAATTTCTACTGCGTTTTCACGCGTGTTTTAATGATGAGTTCTTCGGTTCATCTCTTATCATTTTAAAAAAAAATTAATTATC

Coding sequences of Glyma08g27812

Limit To All Plant Sequences

>Glyma08g27812.1   sequence type=CDS   gene model=Glyma08g27812   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTCGTGATCTTATTATGTGGAATCCGTTGACAAGATTCCGTAAACGATCACTAAACTTTGAAAATATGCTAACCCATCGATTTTTATATGGTTTTGGGTATGACACATCAACAGATGACTACTTGCTAATTATGATCCCGTTTCATTGGAAAACTGAAATCCAGGTTTTCTCATTCAAAACTAATTCCAGGAACAGAAAGATGATTAAACTTAATGTTCCATACCAGGGTATCGGCTCGAAATTCAGTATTGGATCACTCTTGAATGAGACACTTCATTGGTTGGTTTTCTCTAAGGATAAATGGGTTGATGTGATTATTGCCTTTGATCTTATAAAAAGGAGTTTATCAGAGATTGCTCTGTTTGATCATTTAACAAAGAAAAAATATGAAATGTTTAGTTTAAGAGTAATAGGAGGATGTCTCAGTGTGAGTTGCTCGGACCAAGACTGGGCAATGACTGAAATATGGATAATGAAAGAATATAAAGTGCAGTCATCTTGGACTAAGTCTTTTGTAATCCCTACATATGGCTTTTCCCCCATATGCATCACCAAAGATGGAGGAATTTTGGGATCAAATATGAGAGAAAGATTGGAGAAACATAATGACAAAGGAGAGTTGCTTGAGCATCTCGCCTGTGTTGCTGCTGCAGGTGAAGAGTACTACTGTGCCAACCAAGATCAACAATCTGCAATGTATAGAGAGAGTCAACTGTTTCCCAATGTCAGTTGGGAAACAAGTGAAGATCACCAACAGTAA

>Glyma08g27812.2   sequence type=CDS   gene model=Glyma08g27812   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTCGTGATCTTATTATGTGGAATCCGTTGACAAGATTCCGTAAACGATCACTAAACTTTGAAAATATGCTAACCCATCGATTTTTATATGGTTTTGGGTATGACACATCAACAGATGACTACTTGCTAATTATGATCCCGTTTCATTGGAAAACTGAAATCCAGGTTTTCTCATTCAAAACTAATTCCAGGAACAGAAAGATGATTAAACTTAATGTTCCATACCAGGGTATCGGCTCGAAATTCAGTATTGGATCACTCTTGAATGAGACACTTCATTGGTTGGTTTTCTCTAAGGATAAATGGGTTGATGTGATTATTGCCTTTGATCTTATAAAAAGGAGTTTATCAGAGATTGCTCTGTTTGATCATTTAACAAAGAAAAAATATGAAATGTTTAGTTTAAGAGTAATAGGAGGATGTCTCAGTGTGAGTTGCTCGGACCAAGACTGGGCAATGACTGAAATATGGATAATGAAAGAATATAAAGTGCAGTCATCTTGGACTAAGTCTTTTGTAATCCCTACATATGGCTTTTCCCCCATATGCATCACCAAAGATGGAGGAATTTTGGGATCAAATATGAGAGAAAGATTGGAGAAACATAATGACAAAGGAGAGTTGCTTGAGCATCTCGCCTGTGTTGCTGCTGCAGGTGAAGAGTACTACTGTGCCAACCAAGATCAACAATCTGCAATGTATAGAGAGAGTCAACTGTTTCCCAATGTCAGTTGGGAAACAAGTGAAGATCACCAACAGTAA

>Glyma08g27812.3   sequence type=CDS   gene model=Glyma08g27812   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTCGTGATCTTATTATGTGGAATCCGTTGACAAGATTCCGTAAACGATCACTAAACTTTGAAAATATGCTAACCCATCGATTTTTATATGGTTTTGGGTATGACACATCAACAGATGACTACTTGCTAATTATGATCCCGTTTCATTGGAAAACTGAAATCCAGGTTTTCTCATTCAAAACTAATTCCAGGAACAGAAAGATGATTAAACTTAATGTTCCATACCAGGGTATCGGCTCGAAATTCAGTATTGGATCACTCTTGAATGAGACACTTCATTGGTTGGTTTTCTCTAAGGATAAATGGGTTGATGTGATTATTGCCTTTGATCTTATAAAAAGGAGTTTATCAGAGATTGCTCTGTTTGATCATTTAACAAAGAAAAAATATGAAATGTTTAGTTTAAGAGTAATAGGAGGATGTCTCAGTGTGAGTTGCTCGGACCAAGACTGGGCAATGACTGAAATATGGATAATGAAAGAATATAAAGTGCAGTCATCTTGGACTAAGTCTTTTGTAATCCCTACATATGGCTTTTCCCCCATATGCATCACCAAAGATGGAGGAATTTTGGGATCAAATATGAGAGAAAGATTGGAGAAACATAATGACAAAGGAGAGTTGCTTGAGCATCTCGCCTGTGTTGCTGCTGCAGGTGAAGAGTACTACTGTGCCAACCAAGATCAACAATCTGCAATGTATAGAGAGAGTCAACTGTTTCCCAATGTCAGTTGGGAAACAAGTGAAGATCACCAACAGTAA

Predicted protein sequences of Glyma08g27812

Limit To All Plant Sequences

>Glyma08g27812.1   sequence type=predicted peptide   gene model=Glyma08g27812   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRDLIMWNPLTRFRKRSLNFENMLTHRFLYGFGYDTSTDDYLLIMIPFHWKTEIQVFSFKTNSRNRKMIKLNVPYQGIGSKFSIGSLLNETLHWLVFSKDKWVDVIIAFDLIKRSLSEIALFDHLTKKKYEMFSLRVIGGCLSVSCSDQDWAMTEIWIMKEYKVQSSWTKSFVIPTYGFSPICITKDGGILGSNMRERLEKHNDKGELLEHLACVAAAGEEYYCANQDQQSAMYRESQLFPNVSWETSEDHQQ*

>Glyma08g27812.2   sequence type=predicted peptide   gene model=Glyma08g27812   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRDLIMWNPLTRFRKRSLNFENMLTHRFLYGFGYDTSTDDYLLIMIPFHWKTEIQVFSFKTNSRNRKMIKLNVPYQGIGSKFSIGSLLNETLHWLVFSKDKWVDVIIAFDLIKRSLSEIALFDHLTKKKYEMFSLRVIGGCLSVSCSDQDWAMTEIWIMKEYKVQSSWTKSFVIPTYGFSPICITKDGGILGSNMRERLEKHNDKGELLEHLACVAAAGEEYYCANQDQQSAMYRESQLFPNVSWETSEDHQQ*

>Glyma08g27812.3   sequence type=predicted peptide   gene model=Glyma08g27812   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRDLIMWNPLTRFRKRSLNFENMLTHRFLYGFGYDTSTDDYLLIMIPFHWKTEIQVFSFKTNSRNRKMIKLNVPYQGIGSKFSIGSLLNETLHWLVFSKDKWVDVIIAFDLIKRSLSEIALFDHLTKKKYEMFSLRVIGGCLSVSCSDQDWAMTEIWIMKEYKVQSSWTKSFVIPTYGFSPICITKDGGILGSNMRERLEKHNDKGELLEHLACVAAAGEEYYCANQDQQSAMYRESQLFPNVSWETSEDHQQ*

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